[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4627	7957043	NM_006654	FRS2		fibroblast growth factor receptor substrate 2

Fetching correlation data, please wait...
Getting list of correlations for id 4627.
Getting list of p-values for id 4627.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7957043	7903188	NM_021190	PTBP2	0.750021	3.349693e-20	5.804013e-16	5.804013e-16
2	7957043	7962760	NM_014554	SENP1	0.748106	4.701574e-20	8.146418e-16	4.073209e-16
3	7957043	7918847	NM_001102396	SIKE1	0.745863	6.967842e-20	1.207318e-15	4.024393e-16
4	7957043	8100026	NM_006095	ATP8A1	0.744555	8.747065e-20	1.515604e-15	3.789010e-16
5	7957043	7936567	NM_014904	RAB11FIP2	0.744313	9.121897e-20	1.580551e-15	3.161102e-16
6	7957043	7934278	NM_000917	P4HA1	0.736437	3.482732e-19	6.034529e-15	1.005755e-15
7	7957043	7943297	NM_014679	CEP57	0.731574	7.777591e-19	1.347623e-14	1.925176e-15
8	7957043	7951046	NM_005591	MRE11A	0.730892	8.694179e-19	1.506440e-14	1.883051e-15
9	7957043	8069574	NM_001100420	C21orf91	0.728441	1.293344e-18	2.240977e-14	2.489974e-15
10	7957043	8047217	NM_025147	COQ10B	0.728172	1.350608e-18	2.340198e-14	2.340198e-15
11	7957043	7909992	NM_015176	FBXO28	0.727154	1.590511e-18	2.755879e-14	2.505345e-15
12	7957043	8081073	NM_173824	C3orf38	0.722715	3.217252e-18	5.574533e-14	4.645444e-15
13	7957043	7943580	NM_003478	CUL5	0.722401	3.379901e-18	5.856354e-14	4.504888e-15
14	7957043	7916570	NM_145243	OMA1	0.718630	6.079818e-18	1.053450e-13	7.524643e-15
15	7957043	7901418	NM_152265	BTF3L4	0.718430	6.270327e-18	1.086460e-13	7.243063e-15
16	7957043	8083709	NM_005496	SMC4	0.717776	6.934854e-18	1.201602e-13	7.510013e-15
17	7957043	8068062	NM_006447	USP16	0.717103	7.689977e-18	1.332442e-13	7.837896e-15
18	7957043	8023735	NM_019022	TMX3	0.716953	7.868478e-18	1.363371e-13	7.574284e-15
19	7957043	7936419	NM_018017	C10orf118	0.716644	8.250071e-18	1.429490e-13	7.523631e-15
20	7957043	8134122	NM_005751	AKAP9	0.716606	8.298748e-18	1.437924e-13	7.189620e-15
21	7957043	8050658	NM_017552	ATAD2B	0.716293	8.705906e-18	1.508472e-13	7.183201e-15
22	7957043	8131479	NM_019005	MIOS	0.715388	9.993878e-18	1.731639e-13	7.871087e-15
23	7957043	7934812	NM_015045	WAPAL	0.715335	1.007539e-17	1.745763e-13	7.590272e-15
24	7957043	8055645	NM_002552	ORC4L	0.714987	1.062359e-17	1.840749e-13	7.669788e-15
25	7957043	7918467	NM_018372	C1orf103	0.714965	1.065827e-17	1.846758e-13	7.387031e-15
26	7957043	8082911	NM_006153	NCK1	0.714687	1.111905e-17	1.926598e-13	7.409992e-15
27	7957043	8006325	NM_015355	SUZ12	0.714342	1.171678e-17	2.030167e-13	7.519137e-15
28	7957043	7929562	NM_014803	ZNF518A	0.713749	1.281639e-17	2.220696e-13	7.931056e-15
29	7957043	8106025	NM_018429	BDP1	0.712218	1.614323e-17	2.797137e-13	9.645301e-15
30	7957043	8055890	NM_005843	STAM2	0.711508	1.795683e-17	3.111380e-13	1.037127e-14
31	7957043	7923141	NM_144977	DENND1B	0.711186	1.884550e-17	3.265360e-13	1.053342e-14
32	7957043	8097704	NM_018241	TMEM184C	0.711064	1.919134e-17	3.325284e-13	1.039151e-14
33	7957043	8018038	NM_018672	ABCA5	0.710755	2.009708e-17	3.482221e-13	1.055218e-14
34	7957043	8022927	NM_012319	SLC39A6	0.710654	2.040239e-17	3.535123e-13	1.039742e-14
35	7957043	8116227	NM_020666	CLK4	0.710270	2.160429e-17	3.743375e-13	1.069536e-14
36	7957043	7938762	NM_005316	GTF2H1	0.709810	2.313836e-17	4.009183e-13	1.113662e-14
37	7957043	7969228	NM_001004127	ALG11	0.709659	2.366159e-17	4.099843e-13	1.108066e-14
38	7957043	8105504	NM_152789	FAM133B	0.709321	2.487836e-17	4.310673e-13	1.134388e-14
39	7957043	8091190	NM_001184	ATR	0.709019	2.601808e-17	4.508153e-13	1.155937e-14
40	7957043	8090237	NM_021964	ZNF148	0.709003	2.608271e-17	4.519350e-13	1.129838e-14
41	7957043	8120992	NM_015021	ZNF292	0.708965	2.623023e-17	4.544911e-13	1.108515e-14
42	7957043	8067295	NM_016045	SLMO2	0.708870	2.659862e-17	4.608743e-13	1.097320e-14
43	7957043	8140942	NM_001040057	FAM133B	0.708450	2.830744e-17	4.904830e-13	1.140658e-14
44	7957043	7903519	NM_018061	PRPF38B	0.708109	2.976794e-17	5.157891e-13	1.172248e-14
45	7957043	8025998	NM_003437	ZNF136	0.707906	3.067623e-17	5.315271e-13	1.181171e-14
46	7957043	8100615	NM_018227	UBA6	0.707726	3.150032e-17	5.458060e-13	1.186535e-14
47	7957043	7900395	NM_012421	RLF	0.707718	3.153597e-17	5.464237e-13	1.162604e-14
48	7957043	8084146	NM_001013439	FXR1	0.707202	3.402820e-17	5.896066e-13	1.228347e-14
49	7957043	8177560	NM_018429	BDP1	0.706830	3.593674e-17	6.226759e-13	1.270767e-14
50	7957043	7932703	NM_145698	ACBD5	0.706070	4.017424e-17	6.960991e-13	1.392198e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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