[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3279	7949873	NM_080658	ACY3		aspartoacylase (aminocyclase) 3

Fetching correlation data, please wait...
Getting list of correlations for id 3279.
Getting list of p-values for id 3279.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7949873	8143247	NM_020910	KIAA1549	0.770768	6.906424e-22	1.196676e-17	1.196676e-17
2	7949873	7942717	NM_000260	MYO7A	0.749505	3.671376e-20	6.361393e-16	3.180697e-16
3	7949873	8028407	NM_000540	RYR1	0.748155	4.661293e-20	8.076622e-16	2.692207e-16
4	7949873	7936144	NM_000494	COL17A1	0.740440	1.773445e-19	3.072848e-15	7.682120e-16
5	7949873	7899627	NM_022164	TINAGL1	0.737994	2.682436e-19	4.647857e-15	9.295713e-16
6	7949873	8090044	NM_001031702	SEMA5B	0.735094	4.355363e-19	7.546538e-15	1.257756e-15
7	7949873	8155083	NM_001216	CA9	0.732995	6.161413e-19	1.067588e-14	1.525126e-15
8	7949873	7987701	NM_016642	SPTBN5	0.731536	7.826109e-19	1.356030e-14	1.695037e-15
9	7949873	8153322	NM_015193	ARC	0.728854	1.210043e-18	2.096641e-14	2.329601e-15
10	7949873	7997880	NM_004933	CDH15	0.728322	1.318364e-18	2.284329e-14	2.284329e-15
11	7949873	8048707	NM_153038	CCDC140	0.727005	1.628857e-18	2.822321e-14	2.565746e-15
12	7949873	8013384	NM_000691	ALDH3A1	0.722783	3.183316e-18	5.515732e-14	4.596443e-15
13	7949873	7898833	NM_001009999	KDM1A	-0.721740	3.749116e-18	6.496093e-14	4.996995e-15
14	7949873	8086810	NM_003074	SMARCC1	-0.720870	4.294717e-18	7.441457e-14	5.315326e-15
15	7949873	7913450	NM_005529	HSPG2	0.720753	4.373698e-18	7.578306e-14	5.052204e-15
16	7949873	7986960	NM_015307	FAM189A1	0.720446	4.587863e-18	7.949391e-14	4.968369e-15
17	7949873	8080128	NM_000839	GRM2	0.718153	6.543626e-18	1.133814e-13	6.669494e-15
18	7949873	8064277	NM_004535	MYT1	0.715480	9.854817e-18	1.707544e-13	9.486356e-15
19	7949873	7906307	NM_018240	KIRREL	0.714765	1.098734e-17	1.903776e-13	1.001987e-14
20	7949873	8049942	NM_080741	NEU4	0.714747	1.101852e-17	1.909179e-13	9.545895e-15
21	7949873	7989887	NM_032445	MEGF11	0.714004	1.233205e-17	2.136775e-13	1.017512e-14
22	7949873	8089729	NM_001015887	IGSF11	0.713532	1.324348e-17	2.294699e-13	1.043045e-14
23	7949873	7937560	NM_002457	MUC2	0.713114	1.410606e-17	2.444157e-13	1.062677e-14
24	7949873	7991296	NM_198525	KIF7	0.712303	1.593768e-17	2.761521e-13	1.150634e-14
25	7949873	8096556	NM_015143	METAP1	-0.711766	1.727522e-17	2.993277e-13	1.197311e-14
26	7949873	7913571	NM_001102398	HNRNPR	-0.711410	1.822199e-17	3.157324e-13	1.214355e-14
27	7949873	8138450	NM_152898	FERD3L	0.710849	1.981783e-17	3.433836e-13	1.271791e-14
28	7949873	7926871			0.709695	2.353572e-17	4.078034e-13	1.456441e-14
29	7949873	7973580	NM_203402	FITM1	0.709662	2.365080e-17	4.097975e-13	1.413095e-14
30	7949873	8068894	NR_026960	C21orf125	0.708951	2.628181e-17	4.553849e-13	1.517950e-14
31	7949873	7920744	NM_000298	PKLR	0.707969	3.038997e-17	5.265671e-13	1.698603e-14
32	7949873	8009602	NM_153209	KIF19	0.706638	3.696592e-17	6.405085e-13	2.001589e-14
33	7949873	8163548	NM_138424	KIF12	0.706262	3.905956e-17	6.767850e-13	2.050864e-14
34	7949873	8175732	NM_175742	MAGEA2	0.704721	4.891556e-17	8.475599e-13	2.492823e-14
35	7949873	7955589	NM_002135	NR4A1	0.702782	6.479485e-17	1.122700e-12	3.207715e-14
36	7949873	8152079	NM_002568	PABPC1	-0.701802	7.462474e-17	1.293023e-12	3.591730e-14
37	7949873	8059028	NM_194302	CCDC108	0.700898	8.497028e-17	1.472280e-12	3.979135e-14
38	7949873	8170562	NM_175742	MAGEA2	0.700489	9.008614e-17	1.560923e-12	4.107691e-14
39	7949873	7914667	NM_052896	CSMD2	0.699973	9.699091e-17	1.680561e-12	4.309132e-14
40	7949873	8024754	NM_032607	CREB3L3	0.699850	9.869611e-17	1.710107e-12	4.275269e-14
41	7949873	7914433	NM_001703	BAI2	0.699723	1.005067e-16	1.741480e-12	4.247512e-14
42	7949873	8064059	NM_020882	COL20A1	0.698987	1.116104e-16	1.933873e-12	4.604459e-14
43	7949873	8156415	NM_006648	WNK2	0.698741	1.155708e-16	2.002496e-12	4.656967e-14
44	7949873	7946661	NM_015881	DKK3	0.698642	1.172156e-16	2.030996e-12	4.615899e-14
45	7949873	8137783	NM_001097620	TMEM184A	0.698574	1.183477e-16	2.050610e-12	4.556911e-14
46	7949873	7977674	NM_007192	SUPT16H	-0.698445	1.205430e-16	2.088648e-12	4.540539e-14
47	7949873	8041582	NM_138370	PKDCC	0.698205	1.247148e-16	2.160932e-12	4.597729e-14
48	7949873	8072436	NM_001002837	INPP5J	0.697407	1.396114e-16	2.419046e-12	5.039679e-14
49	7949873	8015189	NM_030966	KRTAP1-3	0.697066	1.464933e-16	2.538289e-12	5.180182e-14
50	7949873	8019585	NM_030966	KRTAP1-3	0.697066	1.464933e-16	2.538289e-12	5.076578e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation