[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2763	8105499	NM_174889	NDUFAF2		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 2763.
Getting list of p-values for id 2763.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.091 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8105499	8143759	NM_145230	ATP6V0E2	0.453858	1.158656e-6	2.007603e-2	2.007603e-2
2	8105499	8055089	NM_004805	POLR2D	0.446621	1.791358e-6	3.103887e-2	1.551943e-2
3	8105499	8125775	AY568085	C6orf125	0.425066	6.190818e-6	1.072683e-1	3.575610e-2
4	8105499	8175755	NM_004344	CETN2	0.423296	6.829029e-6	1.183266e-1	2.958165e-2
5	8105499	7959157	NM_176818	GATC	0.415127	1.066361e-5	1.847683e-1	3.695366e-2
6	8105499	8163428	AK000637	C9orf80	0.407589	1.592524e-5	2.759366e-1	4.598944e-2
7	8105499	8031884	NM_014480	ZNF544	0.405535	1.773425e-5	3.072813e-1	4.389733e-2
8	8105499	8145854	NM_007198	PROSC	0.404806	1.842244e-5	3.192056e-1	3.990071e-2
9	8105499	7970031	ENST00000364291		0.403486	1.973088e-5	3.418770e-1	3.798634e-2
10	8105499	8154527			0.402615	2.064174e-5	3.576595e-1	3.576595e-2
11	8105499	8163525	NR_027261	POLE3	0.397149	2.732020e-5	4.733771e-1	4.303428e-2
12	8105499	7998967	NM_017810	ZNF434	0.389855	3.941490e-5	6.829420e-1	5.691184e-2
13	8105499	8032804	NM_003025	SH3GL1	0.385036	4.997785e-5	8.659662e-1	6.661278e-2
14	8105499	8042962	NM_014763	MRPL19	0.383523	5.380531e-5	9.322846e-1	6.659175e-2
15	8105499	8026875	NR_000012	SNORA68	0.380294	6.290460e-5	1.089948e+0	7.266320e-2
16	8105499	8112070	ENST00000364499		-0.379396	6.567971e-5	1.138032e+0	7.112702e-2
17	8105499	8076344	NM_001018050	POLR3H	0.378898	6.726800e-5	1.165553e+0	6.856192e-2
18	8105499	8065069			-0.376160	7.665581e-5	1.328215e+0	7.378974e-2
19	8105499	8161147	NM_032593	HINT2	0.373893	8.533817e-5	1.478655e+0	7.782392e-2
20	8105499	8176482	ENST00000455422		0.373842	8.554408e-5	1.482222e+0	7.411111e-2
21	8105499	7950284	NM_002869	RAB6A	0.372292	9.201157e-5	1.594285e+0	7.591831e-2
22	8105499	8021919	NM_020040	TUBB4Q	0.371285	9.645872e-5	1.671340e+0	7.597001e-2
23	8105499	7919155	ENST00000384499		0.370562	9.976961e-5	1.728708e+0	7.516122e-2
24	8105499	7919405	ENST00000384499		0.370562	9.976961e-5	1.728708e+0	7.202950e-2
25	8105499	8172548	NM_015698	GPKOW	0.370370	1.006663e-4	1.744244e+0	6.976977e-2
26	8105499	8003583	NM_007317	KIF22	0.369624	1.042225e-4	1.805864e+0	6.945631e-2
27	8105499	8126360	NM_004275	MED20	0.368987	1.073553e-4	1.860146e+0	6.889430e-2
28	8105499	8006119	hsa-mir-423		0.368646	1.090652e-4	1.889772e+0	6.749187e-2
29	8105499	7927285	NM_005614	RHEB	0.368424	1.101936e-4	1.909325e+0	6.583880e-2
30	8105499	8160295	NR_003009	SCARNA8	0.368395	1.103411e-4	1.911880e+0	6.372933e-2
31	8105499	7910676			0.368249	1.110898e-4	1.924852e+0	6.209201e-2
32	8105499	7976766	NM_024515	WDR25	-0.367191	1.166571e-4	2.021318e+0	6.316618e-2
33	8105499	hsa-miR-181a			-0.365447	1.264010e-4	2.190151e+0	6.636820e-2
34	8105499	7980990	NM_032490	C14orf142	0.364968	1.292104e-4	2.238828e+0	6.584789e-2
35	8105499	8027272	NM_003429	ZNF85	0.364624	1.312621e-4	2.274378e+0	6.498223e-2
36	8105499	8117339	NM_003531	HIST1H3C	0.362689	1.433689e-4	2.484153e+0	6.900425e-2
37	8105499	7994620	NM_007317	KIF22	0.362641	1.436818e-4	2.489575e+0	6.728580e-2
38	8105499	8150266	NM_014462	LSM1	0.362612	1.438713e-4	2.492858e+0	6.560153e-2
39	8105499	8055135			-0.362016	1.478213e-4	2.561299e+0	6.567435e-2
40	8105499	8013533	ENST00000302153		-0.360559	1.578907e-4	2.735772e+0	6.839430e-2
41	8105499	8036840	NM_001626	AKT2	0.360095	1.612359e-4	2.793734e+0	6.813987e-2
42	8105499	8003230	NR_024406	LOC732275	0.359126	1.684221e-4	2.918250e+0	6.948213e-2
43	8105499	8078147	NM_000060	BTD	0.357431	1.817086e-4	3.148466e+0	7.322013e-2
44	8105499	8126442	NM_003192	TBCC	0.357109	1.843363e-4	3.193995e+0	7.259079e-2
45	8105499	7990540	NM_018285	IMP3	0.357095	1.844557e-4	3.196065e+0	7.102366e-2
46	8105499	7905918	NM_004952	EFNA3	0.356213	1.918514e-4	3.324209e+0	7.226541e-2
47	8105499	7992973	NM_005147	DNAJA3	0.355992	1.937448e-4	3.357016e+0	7.142588e-2
48	8105499	7902883	NM_001134479	LRRC8D	0.354477	2.072129e-4	3.590379e+0	7.479956e-2
49	8105499	8167369	NM_006044	HDAC6	0.353592	2.154811e-4	3.733642e+0	7.619677e-2
50	8105499	7991587	NM_203472	SELS	0.353364	2.176578e-4	3.771356e+0	7.542713e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation