[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2702	8078805	NM_001106	ACVR2B		activin A receptor, type IIB

Fetching correlation data, please wait...
Getting list of correlations for id 2702.
Getting list of p-values for id 2702.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8078805	7922095	NR_026550	BRP44	-0.614566	3.094842e-12	5.362433e-8	5.362433e-8
2	8078805	8043310	NM_022780	RMND5A	-0.614542	3.102386e-12	5.375504e-8	2.687752e-8
3	8078805	8086538	BC047037	LOC644714	-0.612299	3.907647e-12	6.770780e-8	2.256927e-8
4	8078805	8041273	NM_032312	YIPF4	-0.610951	4.484707e-12	7.770652e-8	1.942663e-8
5	8078805	8052721	NM_000945	PPP3R1	-0.609657	5.115473e-12	8.863580e-8	1.772716e-8
6	8078805	7935692	NM_001100626	ERLIN1	-0.605998	7.398734e-12	1.281979e-7	2.136631e-8
7	8078805	8013384	NM_000691	ALDH3A1	0.600192	1.316200e-11	2.280580e-7	3.257971e-8
8	8078805	8046726	NM_001130445	SSFA2	-0.598931	1.489361e-11	2.580615e-7	3.225769e-8
9	8078805	8024754	NM_032607	CREB3L3	0.596321	1.920175e-11	3.327088e-7	3.696764e-8
10	8078805	8116622	NM_003804	RIPK1	-0.593924	2.420048e-11	4.193218e-7	4.193218e-8
11	8078805	8079988	BC028000	C3orf45	0.593234	2.585700e-11	4.480242e-7	4.072947e-8
12	8078805	8017212	NM_032582	USP32	-0.591961	2.920633e-11	5.060582e-7	4.217151e-8
13	8078805	7954173	NM_007178	STRAP	-0.591798	2.966464e-11	5.139992e-7	3.953840e-8
14	8078805	7959080	NM_022491	SUDS3	-0.589594	3.657693e-11	6.337684e-7	4.526917e-8
15	8078805	8059596	NM_004238	TRIP12	-0.589372	3.735453e-11	6.472420e-7	4.314947e-8
16	8078805	8052149	NM_014614	PSME4	-0.588733	3.968090e-11	6.875510e-7	4.297194e-8
17	8078805	8000706	NM_006319	CDIPT	-0.587499	4.457097e-11	7.722812e-7	4.542831e-8
18	8078805	7928126	NM_014431	KIAA1274	0.587348	4.520890e-11	7.833346e-7	4.351859e-8
19	8078805	8006690	NM_012138	AATF	-0.586830	4.746353e-11	8.224006e-7	4.328424e-8
20	8078805	8162833	NM_015051	ERP44	-0.585770	5.241504e-11	9.081953e-7	4.540977e-8
21	8078805	8089729	NM_001015887	IGSF11	0.585612	5.319713e-11	9.217467e-7	4.389270e-8
22	8078805	8124365	NM_005835	SLC17A2	0.581671	7.668248e-11	1.328677e-6	6.039443e-8
23	8078805	8093112	NM_015562	UBXN7	-0.580188	8.788300e-11	1.522749e-6	6.620647e-8
24	8078805	8145894	NM_004674	ASH2L	-0.579716	9.176871e-11	1.590076e-6	6.625318e-8
25	8078805	8113214	NM_002064	GLRX	-0.579178	9.639740e-11	1.670278e-6	6.681111e-8
26	8078805	8048234	NM_152862	ARPC2	-0.578321	1.042463e-10	1.806275e-6	6.947211e-8
27	8078805	8034643	NM_001127221	CACNA1A	0.578162	1.057691e-10	1.832661e-6	6.787633e-8
28	8078805	8095148	NM_018475	TMEM165	-0.578087	1.064924e-10	1.845193e-6	6.589975e-8
29	8078805	8098414	NM_021928	SPCS3	-0.578042	1.069310e-10	1.852794e-6	6.388943e-8
30	8078805	7903703	NM_006496	GNAI3	-0.576208	1.263001e-10	2.188402e-6	7.294672e-8
31	8078805	7928752	NM_014394	GHITM	-0.576023	1.284278e-10	2.225269e-6	7.178287e-8
32	8078805	7940173	NM_001004728	OR5A1	0.575861	1.303219e-10	2.258087e-6	7.056523e-8
33	8078805	8038770	NM_022046	KLK14	0.575687	1.323926e-10	2.293967e-6	6.951414e-8
34	8078805	8054740	NM_003466	PAX8	0.575226	1.380084e-10	2.391272e-6	7.033153e-8
35	8078805	8155192	NM_022343	GLIPR2	-0.574761	1.439205e-10	2.493710e-6	7.124887e-8
36	8078805	7986960	NM_015307	FAM189A1	0.574421	1.483901e-10	2.571155e-6	7.142098e-8
37	8078805	7992639	NM_020705	TBC1D24	0.574260	1.505494e-10	2.608569e-6	7.050187e-8
38	8078805	8147172	NM_003909	CPNE3	-0.574259	1.505637e-10	2.608817e-6	6.865307e-8
39	8078805	7937198	BC047942		0.574135	1.522551e-10	2.638125e-6	6.764423e-8
40	8078805	7952290	NM_012101	TRIM29	0.573908	1.553926e-10	2.692487e-6	6.731218e-8
41	8078805	8035201	NM_015692	CPAMD8	0.573464	1.617099e-10	2.801948e-6	6.834020e-8
42	8078805	8043114	NM_031283	TCF7L1	0.573170	1.660311e-10	2.876820e-6	6.849572e-8
43	8078805	7928064	NM_145306	C10orf35	0.571922	1.856255e-10	3.216332e-6	7.479843e-8
44	8078805	7896921	NM_152228	TAS1R3	0.571853	1.867645e-10	3.236069e-6	7.354703e-8
45	8078805	8088602	NM_015520	MAGI1	0.571184	1.982301e-10	3.434732e-6	7.632738e-8
46	8078805	8055261	NM_032144	RAB6C	-0.571125	1.992709e-10	3.452767e-6	7.506015e-8
47	8078805	8150714	NM_052937	PCMTD1	-0.571010	2.013263e-10	3.488381e-6	7.422086e-8
48	8078805	8117748	NM_206814	MOG	0.569936	2.214650e-10	3.837324e-6	7.994424e-8
49	8078805	7989985	NM_001004439	ITGA11	0.569661	2.269251e-10	3.931931e-6	8.024350e-8
50	8078805	7905929	NM_004428	EFNA1	0.569420	2.318225e-10	4.016788e-6	8.033576e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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