[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7083	7980923	NM_004239	TRIP11		thyroid hormone receptor interactor 11

Fetching correlation data, please wait...
Getting list of correlations for id 7083.
Getting list of p-values for id 7083.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.155 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7980923	8140942	NM_001040057	FAM133B	0.862487	3.102980e-32	5.376534e-28	5.376534e-28
2	7980923	8105504	NM_152789	FAM133B	0.851086	1.385249e-30	2.400222e-26	1.200111e-26
3	7980923	8135688	NM_016200	NAA38	0.843035	1.681858e-29	2.914156e-25	9.713852e-26
4	7980923	8100615	NM_018227	UBA6	0.839919	4.257860e-29	7.377595e-25	1.844399e-25
5	7980923	8068062	NM_006447	USP16	0.839901	4.280060e-29	7.416059e-25	1.483212e-25
6	7980923	7974483	NM_182926	KTN1	0.839381	4.987693e-29	8.642175e-25	1.440363e-25
7	7980923	8084146	NM_001013439	FXR1	0.838728	6.039407e-29	1.046448e-24	1.494926e-25
8	7980923	7989253	NM_024755	SLTM	0.837783	7.957136e-29	1.378733e-24	1.723416e-25
9	7980923	8025998	NM_003437	ZNF136	0.836877	1.034323e-28	1.792171e-24	1.991302e-25
10	7980923	7973770	NM_016106	SCFD1	0.835592	1.497076e-28	2.593983e-24	2.593983e-25
11	7980923	7933115	NR_027269	SEPT7L	0.834681	1.941676e-28	3.364342e-24	3.058493e-25
12	7980923	8119080	NM_003017	SRSF3	0.834485	2.052804e-28	3.556894e-24	2.964078e-25
13	7980923	8055913	NM_017892	PRPF40A	0.833550	2.675491e-28	4.635823e-24	3.566018e-25
14	7980923	7971820	NM_016075	VPS36	0.833281	2.886508e-28	5.001452e-24	3.572466e-25
15	7980923	7969935	NM_000123	ERCC5	0.832721	3.379053e-28	5.854884e-24	3.903256e-25
16	7980923	8134122	NM_005751	AKAP9	0.832397	3.701227e-28	6.413116e-24	4.008197e-25
17	7980923	7970546	NM_152726	EFHA1	0.831537	4.706422e-28	8.154817e-24	4.796951e-25
18	7980923	8046759	NM_018981	DNAJC10	0.831178	5.201564e-28	9.012750e-24	5.007083e-25
19	7980923	7974146	NM_017922	PRPF39	0.830620	6.073064e-28	1.052280e-23	5.538315e-25
20	7980923	8173673	NM_000489	ATRX	0.830588	6.127775e-28	1.061760e-23	5.308798e-25
21	7980923	8063283	NM_001316	CSE1L	0.830433	6.396241e-28	1.108277e-23	5.277508e-25
22	7980923	8131479	NM_019005	MIOS	0.830218	6.788737e-28	1.176284e-23	5.346748e-25
23	7980923	7980940	NM_004993	ATXN3	0.828821	9.969378e-28	1.727394e-23	7.510409e-25
24	7980923	8088219	NM_001112736	C3orf63	0.828426	1.110546e-27	1.924243e-23	8.017680e-25
25	7980923	7971967	NM_014953	DIS3	0.827948	1.265293e-27	2.192374e-23	8.769496e-25
26	7980923	7917103	NM_015534	ZZZ3	0.827726	1.344001e-27	2.328751e-23	8.956734e-25
27	7980923	7903032	NM_007358	MTF2	0.826187	2.038346e-27	3.531843e-23	1.308090e-24
28	7980923	8116664	NM_003913	PRPF4B	0.825324	2.570160e-27	4.453316e-23	1.590470e-24
29	7980923	8097480	NM_057175	NAA15	0.824660	3.069105e-27	5.317838e-23	1.833737e-24
30	7980923	8055978	NM_152789	FAM133B	0.824298	3.380205e-27	5.856881e-23	1.952294e-24
31	7980923	8155770	NM_015110	SMC5	0.823325	4.374875e-27	7.580346e-23	2.445273e-24
32	7980923	8095163	NM_001024924	EXOC1	0.823131	4.605442e-27	7.979849e-23	2.493703e-24
33	7980923	7938448	NM_017944	USP47	0.823020	4.741868e-27	8.216235e-23	2.489768e-24
34	7980923	8028186	NM_007145	ZNF146	0.822854	4.954577e-27	8.584795e-23	2.524940e-24
35	7980923	8105801	NM_022902	SLC30A5	0.822290	5.746356e-27	9.956710e-23	2.844774e-24
36	7980923	7930422	NM_005445	SMC3	0.821942	6.296344e-27	1.090968e-22	3.030466e-24
37	7980923	7934278	NM_000917	P4HA1	0.820463	9.261860e-27	1.604802e-22	4.337304e-24
38	7980923	8078270	NM_002948	RPL15	0.819765	1.110008e-26	1.923311e-22	5.061345e-24
39	7980923	7929562	NM_014803	ZNF518A	0.819713	1.124930e-26	1.949165e-22	4.997860e-24
40	7980923	8106303	NM_016218	POLK	0.819618	1.152809e-26	1.997471e-22	4.993678e-24
41	7980923	8039947	NM_006625	SRSF10	0.819611	1.154834e-26	2.000980e-22	4.880439e-24
42	7980923	8175492	NM_173694	ATP11C	0.819494	1.190496e-26	2.062772e-22	4.911363e-24
43	7980923	8027416	NM_003796	C19orf2	0.819315	1.246584e-26	2.159957e-22	5.023155e-24
44	7980923	8083183	NM_001080415	SR140	0.819300	1.251403e-26	2.168306e-22	4.927969e-24
45	7980923	7951447	NM_152434	CWF19L2	0.819248	1.268326e-26	2.197628e-22	4.883617e-24
46	7980923	7901867	NM_003368	USP1	0.818725	1.451156e-26	2.514417e-22	5.466125e-24
47	7980923	8084128	NM_133462	TTC14	0.818680	1.468126e-26	2.543823e-22	5.412388e-24
48	7980923	7913712	NM_006625	SRSF10	0.818501	1.537005e-26	2.663168e-22	5.548267e-24
49	7980923	7951008	NM_024116	TAF1D	0.818487	1.542807e-26	2.673223e-22	5.455556e-24
50	7980923	8113157	NM_014639	TTC37	0.818419	1.569624e-26	2.719687e-22	5.439374e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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