[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2762	8115391	NM_004821	HAND1		heart and neural crest derivatives expressed 1

Fetching correlation data, please wait...
Getting list of correlations for id 2762.
Getting list of p-values for id 2762.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8115391	8006865	NM_032192	PPP1R1B	0.777457	1.809555e-22	3.135416e-18	3.135416e-18
2	8115391	8142971	NM_138693	KLF14	0.767865	1.217993e-21	2.110417e-17	1.055209e-17
3	8115391	8032197	NM_152769	C19orf26	0.761696	3.957837e-21	6.857743e-17	2.285914e-17
4	8115391	7992049	NM_207112	HAGHL	0.760696	4.774584e-21	8.272921e-17	2.068230e-17
5	8115391	8039362	NM_178837	C19orf51	0.751850	2.416072e-20	4.186328e-16	8.372656e-17
6	8115391	8033462	NM_206833	CTXN1	0.750334	3.167872e-20	5.488972e-16	9.148287e-17
7	8115391	8000467	NM_001109763	GSG1L	0.749775	3.499460e-20	6.063514e-16	8.662163e-17
8	8115391	7958577	NM_032829	C12orf34	0.748224	4.605114e-20	7.979282e-16	9.974102e-17
9	8115391	8067409	NM_005560	LAMA5	0.748044	4.753887e-20	8.237059e-16	9.152288e-17
10	8115391	8114550	NM_004883	NRG2	0.747933	4.847331e-20	8.398970e-16	8.398970e-17
11	8115391	8031084	NM_031895	CACNG8	0.747172	5.541651e-20	9.602019e-16	8.729108e-17
12	8115391	7937560	NM_002457	MUC2	0.745600	7.294052e-20	1.263840e-15	1.053200e-16
13	8115391	8075118	NM_001887	CRYBB1	0.744657	8.593490e-20	1.488994e-15	1.145380e-16
14	8115391	8064108	BC000912	C20orf195	0.744392	8.997868e-20	1.559061e-15	1.113615e-16
15	8115391	7912706	NM_004431	EPHA2	0.743503	1.049268e-19	1.818067e-15	1.212045e-16
16	8115391	7945688	NR_003512	INS-IGF2	0.742750	1.194672e-19	2.070009e-15	1.293755e-16
17	8115391	8110382	NM_030567	PRR7	0.740783	1.672755e-19	2.898382e-15	1.704931e-16
18	8115391	7960894	NR_024420	LOC389634	0.740767	1.677383e-19	2.906402e-15	1.614668e-16
19	8115391	8159670	NM_006647	NOXA1	0.738157	2.610106e-19	4.522530e-15	2.380279e-16
20	8115391	8115691	NM_003062	SLIT3	0.737550	2.890523e-19	5.008410e-15	2.504205e-16
21	8115391	8038109	NM_017708	FAM83E	0.737491	2.919235e-19	5.058159e-15	2.408647e-16
22	8115391	8000978	NM_001039503	PRSS53	0.735847	3.842486e-19	6.657876e-15	3.026307e-16
23	8115391	8016320	NM_203400	RPRML	0.735415	4.129236e-19	7.154727e-15	3.110751e-16
24	8115391	8030220	NM_003660	PPFIA3	0.734629	4.705017e-19	8.152383e-15	3.396826e-16
25	8115391	8014706	NM_007144	PCGF2	0.734333	4.940653e-19	8.560669e-15	3.424268e-16
26	8115391	7936144	NM_000494	COL17A1	0.734261	4.999920e-19	8.663361e-15	3.332062e-16
27	8115391	8038565	ENST00000430752		0.734054	5.174136e-19	8.965225e-15	3.320454e-16
28	8115391	8158637	AL834139	HMCN2	0.734029	5.195998e-19	9.003105e-15	3.215395e-16
29	8115391	8064111	NM_032957	RTEL1	0.734015	5.207903e-19	9.023734e-15	3.111632e-16
30	8115391	7936882	NM_001146340	NKX1-2	0.732585	6.590865e-19	1.141999e-14	3.806664e-16
31	8115391	8045332	ENST00000458407		0.731380	8.027934e-19	1.391000e-14	4.487097e-16
32	8115391	8033487	NM_032447	FBN3	0.731308	8.123249e-19	1.407515e-14	4.398486e-16
33	8115391	8049729	NM_198998	AQP12A	0.730982	8.567743e-19	1.484533e-14	4.498584e-16
34	8115391	7992758	NM_172229	KREMEN2	0.730836	8.772746e-19	1.520054e-14	4.470746e-16
35	8115391	7945536	NM_016564	CEND1	0.730405	9.410357e-19	1.630533e-14	4.658664e-16
36	8115391	8033825	NM_015719	COL5A3	0.728459	1.289468e-18	2.234261e-14	6.206281e-16
37	8115391	8028407	NM_000540	RYR1	0.728395	1.303038e-18	2.257775e-14	6.102093e-16
38	8115391	7897416	NM_001080397	SLC45A1	0.728059	1.375389e-18	2.383136e-14	6.271410e-16
39	8115391	7946860	NM_000352	ABCC8	0.726423	1.787829e-18	3.097771e-14	7.943002e-16
40	8115391	8026735	NM_133644	GTPBP3	0.726077	1.889407e-18	3.273776e-14	8.184441e-16
41	8115391	7994961	NM_001330	CTF1	0.725763	1.986229e-18	3.441540e-14	8.393999e-16
42	8115391	7966690	NM_016569	TBX3	0.725385	2.109620e-18	3.655339e-14	8.703187e-16
43	8115391	8153101	NM_152888	COL22A1	0.724884	2.284267e-18	3.957950e-14	9.204535e-16
44	8115391	8104592	NM_012304	FBXL7	0.723858	2.687008e-18	4.655779e-14	1.058132e-15
45	8115391	7916304	NM_147193	GLIS1	0.723557	2.817789e-18	4.882383e-14	1.084974e-15
46	8115391	8010071	NM_001088	AANAT	0.723524	2.832451e-18	4.907787e-14	1.066910e-15
47	8115391	8134827	NM_173564	C7orf51	0.723114	3.021584e-18	5.235498e-14	1.113936e-15
48	8115391	8153838	NM_004260	RECQL4	0.722714	3.217802e-18	5.575485e-14	1.161559e-15
49	8115391	7991939	NM_145294	WDR90	0.722573	3.289748e-18	5.700147e-14	1.163295e-15
50	8115391	7913450	NM_005529	HSPG2	0.722067	3.561764e-18	6.171468e-14	1.234294e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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