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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
5633 8158637 AL834139 HMCN2 link to infopage hemicentin 2
8094 8158666 AK128680 HMCN2 link to infopage hemicentin 2

Fetching correlation data, please wait...
Getting list of correlations for id 5633.
Getting list of p-values for id 5633.
1 of 2 done.
Getting list of correlations for id 8094.
Getting list of p-values for id 8094.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.270 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8158637 7992758 NM_172229 KREMEN2 link to infopage 0.840698 3.381662e-29 1.171881e-24 1.171881e-24
2 8158666 8096556 NM_015143 METAP1 link to infopage -0.825798 2.263558e-27 7.844135e-23 3.922068e-23
3 8158637 8064242 NR_027686 NCRNA00176 link to infopage 0.824612 3.108282e-27 1.077144e-22 3.590480e-23
4 8158637 8159670 NM_006647 NOXA1 link to infopage 0.821254 7.538637e-27 2.612439e-22 6.531098e-23
5 8158637 7955112 NM_181788 H1FNT link to infopage 0.821173 7.698862e-27 2.667964e-22 5.335928e-23
6 8158666 7896921 NM_152228 TAS1R3 link to infopage 0.819062 1.330748e-26 4.611573e-22 7.685955e-23
7 8158637 7991939 NM_145294 WDR90 link to infopage 0.817521 1.974876e-26 6.843735e-22 9.776765e-23
8 8158666 8067409 NM_005560 LAMA5 link to infopage 0.816885 2.322052e-26 8.046839e-22 1.005855e-22
9 8158666 8014269 NM_139285 GAS2L2 link to infopage 0.815335 3.436651e-26 1.190937e-21 1.323263e-22
10 8158666 7913450 NM_005529 HSPG2 link to infopage 0.814062 4.729360e-26 1.638912e-21 1.638912e-22
11 8158637 8121209 NM_005604 POU3F2 link to infopage 0.813063 6.065443e-26 2.101919e-21 1.910835e-22
12 8158637 8148902 NM_005309 GPT link to infopage 0.810956 1.020009e-25 3.534741e-21 2.945617e-22
13 8158666 7937560 NM_002457 MUC2 link to infopage 0.809193 1.567853e-25 5.433239e-21 4.179414e-22
14 8158637 8164562 NM_199350 C9orf50 link to infopage 0.809036 1.628882e-25 5.644728e-21 4.031949e-22
15 8158637 8144078 NM_000193 SHH link to infopage 0.808038 2.073139e-25 7.184256e-21 4.789504e-22
16 8158666 8048551 NM_005876 SPEG link to infopage 0.807770 2.211490e-25 7.663698e-21 4.789811e-22
17 8158637 8039605 NM_001005850 ZNF835 link to infopage 0.807474 2.374781e-25 8.229565e-21 4.840921e-22
18 8158666 7970241 NM_000504 F10 link to infopage 0.806682 2.871031e-25 9.949271e-21 5.527373e-22
19 8158637 8010696 NM_148896 NPB link to infopage 0.805775 3.564246e-25 1.235154e-20 6.500810e-22
20 8158637 8019693 NM_148896 NPB link to infopage 0.805775 3.564246e-25 1.235154e-20 6.175769e-22
21 8158637 8159036 NM_139025 ADAMTS13 link to infopage 0.803943 5.498237e-25 1.905359e-20 9.073138e-22
22 8158666 8153346 NM_023946 LYNX1 link to infopage 0.803040 6.796031e-25 2.355096e-20 1.070498e-21
23 8158637 8018379 NM_020753 CASKIN2 link to infopage 0.802252 8.169338e-25 2.831003e-20 1.230871e-21
24 8158637 8137330 ENST00000356058 link to infopage 0.802155 8.356476e-25 2.895853e-20 1.206605e-21
25 8158637 8053728 NM_000798 DRD5 link to infopage 0.801819 9.035486e-25 3.131157e-20 1.252463e-21
26 8158637 7912004 NM_207370 GPR153 link to infopage 0.800050 1.360315e-24 4.714036e-20 1.813091e-21
27 8158666 7936762 NM_001001976 ATE1 link to infopage -0.799778 1.448094e-24 5.018224e-20 1.858602e-21
28 8158637 8030015 NM_012451 SYNGR4 link to infopage 0.799710 1.471083e-24 5.097891e-20 1.820675e-21
29 8158637 8074131 NM_001080420 SHANK3 link to infopage 0.799580 1.515507e-24 5.251839e-20 1.810979e-21
30 8158637 8006063 NM_152345 ANKRD13B link to infopage 0.799515 1.538244e-24 5.330631e-20 1.776877e-21
31 8158637 8086051 NM_015551 SUSD5 link to infopage 0.797538 2.415452e-24 8.370507e-20 2.700164e-21
32 8158666 7990928 ENST00000342039 link to infopage 0.797192 2.612811e-24 9.054435e-20 2.829511e-21
33 8158666 7985459 ENST00000342039 link to infopage 0.797192 2.612811e-24 9.054435e-20 2.743768e-21
34 8158666 7985418 ENST00000342039 link to infopage 0.797192 2.612811e-24 9.054435e-20 2.663069e-21
35 8158666 7896822 NM_198576 AGRN link to infopage 0.796409 3.118132e-24 1.080558e-19 3.087307e-21
36 8158666 7913571 NM_001102398 HNRNPR link to infopage -0.795404 3.908708e-24 1.354524e-19 3.762566e-21
37 8158637 8046276 NM_001003845 SP5 link to infopage 0.794897 4.379050e-24 1.517516e-19 4.101394e-21
38 8158637 8038109 NM_017708 FAM83E link to infopage 0.794851 4.424374e-24 1.533222e-19 4.034796e-21
39 8158637 8163936 NM_014368 LHX6 link to infopage 0.794848 4.426815e-24 1.534069e-19 3.933509e-21
40 8158666 8018379 NM_020753 CASKIN2 link to infopage 0.794703 4.573153e-24 1.584780e-19 3.961951e-21
41 8158637 8131056 NM_017781 CYP2W1 link to infopage 0.793713 5.701247e-24 1.975710e-19 4.818805e-21
42 8158666 8132070 NM_002047 GARS link to infopage -0.791704 8.886600e-24 3.079562e-19 7.332292e-21
43 8158637 8048460 NM_003936 CDK5R2 link to infopage 0.791382 9.538989e-24 3.305641e-19 7.687538e-21
44 8158637 8131096 NM_001128636 ELFN1 link to infopage 0.791247 9.824284e-24 3.404507e-19 7.737517e-21
45 8158637 7927028 NM_153368 GJD4 link to infopage 0.790650 1.119468e-23 3.879404e-19 8.620898e-21
46 8158637 7897860 NM_001243 TNFRSF8 link to infopage 0.790594 1.133288e-23 3.927295e-19 8.537598e-21
47 8158637 8026407 NM_033025 SYDE1 link to infopage 0.790545 1.145559e-23 3.969819e-19 8.446424e-21
48 8158637 7991296 NM_198525 KIF7 link to infopage 0.789424 1.462248e-23 5.067273e-19 1.055682e-20
49 8158637 8031499 AF086519 SSC5D link to infopage 0.789144 1.553544e-23 5.383653e-19 1.098705e-20
50 8158666 7920744 NM_000298 PKLR link to infopage 0.788565 1.761054e-23 6.102755e-19 1.220551e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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