[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7523	8031499	AF086519	SSC5D		scavenger receptor cysteine-rich glycoprotein

Fetching correlation data, please wait...
Getting list of correlations for id 7523.
Getting list of p-values for id 7523.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031499	8121209	NM_005604	POU3F2	0.842391	2.040946e-29	3.536347e-25	3.536347e-25
2	8031499	7949015	NM_001144936	C11orf95	0.832517	3.578776e-28	6.200945e-24	3.100472e-24
3	8031499	8064242	NR_027686	NCRNA00176	0.832221	3.888212e-28	6.737104e-24	2.245701e-24
4	8031499	8038109	NM_017708	FAM83E	0.830622	6.069364e-28	1.051639e-23	2.629097e-24
5	8031499	8042896	NM_016170	TLX2	0.829275	8.802316e-28	1.525177e-23	3.050354e-24
6	8031499	8048460	NM_003936	CDK5R2	0.828731	1.021702e-27	1.770303e-23	2.950506e-24
7	8031499	8104122	NM_033178	DUX4	0.828407	1.116338e-27	1.934279e-23	2.763256e-24
8	8031499	8064059	NM_020882	COL20A1	0.827576	1.399890e-27	2.425590e-23	3.031988e-24
9	8031499	8038362	NM_178449	PTH2	0.822971	4.804335e-27	8.324471e-23	9.249412e-24
10	8031499	8067409	NM_005560	LAMA5	0.822212	5.865344e-27	1.016288e-22	1.016288e-23
11	8031499	8035506	NM_004750	CRLF1	0.821662	6.775446e-27	1.173981e-22	1.067256e-23
12	8031499	8159036	NM_139025	ADAMTS13	0.820570	9.007629e-27	1.560752e-22	1.300627e-23
13	8031499	7992147	NM_021098	CACNA1H	0.819396	1.220912e-26	2.115475e-22	1.627288e-23
14	8031499	7897416	NM_001080397	SLC45A1	0.818897	1.388357e-26	2.405607e-22	1.718291e-23
15	8031499	8159670	NM_006647	NOXA1	0.818722	1.452337e-26	2.516464e-22	1.677643e-23
16	8031499	8159142	NM_000093	COL5A1	0.818519	1.529862e-26	2.650791e-22	1.656744e-23
17	8031499	8062948	NM_014276	RBPJL	0.817948	1.771002e-26	3.068615e-22	1.805068e-23
18	8031499	8137330	ENST00000356058		0.816213	2.753569e-26	4.771109e-22	2.650616e-23
19	8031499	8028407	NM_000540	RYR1	0.814715	4.016435e-26	6.959277e-22	3.662778e-23
20	8031499	7937560	NM_002457	MUC2	0.814693	4.037851e-26	6.996384e-22	3.498192e-23
21	8031499	8024038	NM_001700	AZU1	0.813762	5.096901e-26	8.831400e-22	4.205429e-23
22	8031499	7911376	NM_001142467	HES4	0.813087	6.028608e-26	1.044577e-21	4.748077e-23
23	8031499	8133704	NM_001110199	SRRM3	0.812559	6.872536e-26	1.190804e-21	5.177410e-23
24	8031499	8049942	NM_080741	NEU4	0.810453	1.153653e-25	1.998935e-21	8.328895e-23
25	8031499	8038584	NM_001080457	LRRC4B	0.810079	1.263933e-25	2.190016e-21	8.760065e-23
26	8031499	8098740	NM_033178	DUX4	0.808373	1.912143e-25	3.313169e-21	1.274296e-22
27	8031499	8039362	NM_178837	C19orf51	0.806587	2.936892e-25	5.088753e-21	1.884723e-22
28	8031499	8162472	NM_021570	BARX1	0.805782	3.557873e-25	6.164726e-21	2.201688e-22
29	8031499	7928291	NM_004273	CHST3	0.805773	3.566117e-25	6.179011e-21	2.130693e-22
30	8031499	8024605	NM_021938	CELF5	0.805723	3.608576e-25	6.252579e-21	2.084193e-22
31	8031499	8053022	NM_001965	EGR4	0.805708	3.621435e-25	6.274861e-21	2.024149e-22
32	8031499	8073449	NM_014460	CSDC2	0.804921	4.364168e-25	7.561793e-21	2.363060e-22
33	8031499	7949843	NM_016366	CABP2	0.804768	4.525052e-25	7.840558e-21	2.375927e-22
34	8031499	7966690	NM_016569	TBX3	0.804763	4.530953e-25	7.850782e-21	2.309054e-22
35	8031499	8086985	NM_000094	COL7A1	0.803907	5.544524e-25	9.606997e-21	2.744856e-22
36	8031499	7960894	NR_024420	LOC389634	0.803900	5.553935e-25	9.623302e-21	2.673140e-22
37	8031499	8131056	NM_017781	CYP2W1	0.803686	5.840510e-25	1.011985e-20	2.735095e-22
38	8031499	8158554	NM_016307	PRRX2	0.803185	6.567947e-25	1.138028e-20	2.994811e-22
39	8031499	8000467	NM_001109763	GSG1L	0.802971	6.906675e-25	1.196720e-20	3.068512e-22
40	8031499	7977033	NM_030943	AMN	0.802930	6.973134e-25	1.208235e-20	3.020587e-22
41	8031499	8112592	NM_004472	FOXD1	0.802725	7.315171e-25	1.267500e-20	3.091463e-22
42	8031499	7900001	NM_178548	TFAP2E	0.802487	7.732859e-25	1.339872e-20	3.190172e-22
43	8031499	8075200	NM_012265	RHBDD3	0.801853	8.964157e-25	1.553219e-20	3.612138e-22
44	8031499	8131379	ENST00000384488		0.801781	9.115201e-25	1.579391e-20	3.589525e-22
45	8031499	8153101	NM_152888	COL22A1	0.801326	1.013122e-24	1.755436e-20	3.900969e-22
46	8031499	7991939	NM_145294	WDR90	0.801106	1.065968e-24	1.847003e-20	4.015224e-22
47	8031499	7992049	NM_207112	HAGHL	0.801027	1.085753e-24	1.881284e-20	4.002732e-22
48	8031499	8125234	NM_019105	TNXB	0.800662	1.181375e-24	2.046968e-20	4.264516e-22
49	8031499	8005328	NM_016239	MYO15A	0.800584	1.202792e-24	2.084078e-20	4.253221e-22
50	8031499	8032088	NM_214710	PRSSL1	0.800336	1.273749e-24	2.207025e-20	4.414050e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation