Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6221	8164698	NM_004269	MED27		mediator complex subunit 27
8615	8112890	NM_004269	MED27		mediator complex subunit 27

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8112890	8044849	NM_002830	PTPN4		0.731968	7.292565e-19	2.527165e-14	2.527165e-14
2	8112890	7915882	NM_014774	KIAA0494		0.726981	1.635182e-18	5.666560e-14	2.833280e-14
3	8112890	8131709	NM_003112	SP4		0.721663	3.794508e-18	1.314949e-13	4.383162e-14
4	8112890	8146482	NM_024831	TGS1		0.720168	4.790370e-18	1.660055e-13	4.150137e-14
5	8112890	7915995	NM_007051	FAF1		0.710784	2.000968e-17	6.934156e-13	1.386831e-13
6	8112890	8154531	NM_017925	DENND4C		0.705770	4.197785e-17	1.454700e-12	2.424501e-13
7	8112890	7925978	NM_017782	C10orf18		0.703558	5.791657e-17	2.007041e-12	2.867201e-13
8	8112890	7962760	NM_014554	SENP1		0.695325	1.871022e-16	6.483838e-12	8.104798e-13
9	8112890	8130116	NM_004690	LATS1		0.695002	1.957463e-16	6.783392e-12	7.537102e-13
10	8112890	8094501	NM_020860	STIM2		0.694515	2.095497e-16	7.261734e-12	7.261734e-13
11	8112890	8128472	NM_006828	ASCC3		0.693904	2.281866e-16	7.907579e-12	7.188708e-13
12	8112890	8014257	NM_001145027	SLFN12L		0.693647	2.364784e-16	8.194924e-12	6.829103e-13
13	8112890	8050176	NM_004763	ITGB1BP1		0.690771	3.519821e-16	1.219759e-11	9.382759e-13
14	8112890	8031714	NM_006635	ZNF460		0.690016	3.904014e-16	1.352897e-11	9.663551e-13
15	8112890	8175420	NM_002139	RBMX		0.689449	4.219353e-16	1.462174e-11	9.747830e-13
16	8112890	7967386	NM_022782	MPHOSPH9		0.689314	4.297940e-16	1.489408e-11	9.308800e-13
17	8112890	8120698	NM_133645	MTO1		0.686448	6.344204e-16	2.198521e-11	1.293247e-12
18	8112890	8050367	NM_015909	NBAS		0.684713	8.013277e-16	2.776921e-11	1.542734e-12
19	8112890	8022625	NM_001007559	SS18		0.684703	8.024303e-16	2.780742e-11	1.463548e-12
20	8112890	7965812	NM_024312	GNPTAB		0.684676	8.053415e-16	2.790831e-11	1.395415e-12
21	8112890	8160151	NM_178566	ZDHHC21		0.683670	9.215117e-16	3.193407e-11	1.520670e-12
22	8112890	8028227	NM_152604	ZNF383		0.683307	9.673051e-16	3.352099e-11	1.523681e-12
23	8112890	7904340	NM_006699	MAN1A2		0.683135	9.897457e-16	3.429865e-11	1.491246e-12
24	8112890	7948997	NM_015459	ATL3		0.682192	1.122013e-15	3.888224e-11	1.620094e-12
25	8112890	7971246	NM_015058	KIAA0564		0.681498	1.230317e-15	4.263542e-11	1.705417e-12
26	8112890	8092095	NM_015028	TNIK		0.681112	1.294718e-15	4.486715e-11	1.725659e-12
27	8112890	8030946	NM_001039886	ZNF808		0.680497	1.404305e-15	4.866478e-11	1.802399e-12
28	8112890	8053834	NM_025190	ANKRD36B		0.680132	1.473558e-15	5.106468e-11	1.823739e-12
29	8112890	8038949	NM_001136499	ZNF841		0.679755	1.548645e-15	5.366676e-11	1.850578e-12
30	8164698	8038792	NM_001985	ETFB		0.678880	1.737152e-15	6.019927e-11	2.006642e-12
31	8112890	7931081	NM_021622	PLEKHA1		0.678574	1.808235e-15	6.266257e-11	2.021373e-12
32	8112890	8130129	NM_198887	NUP43		0.676537	2.358521e-15	8.173217e-11	2.554130e-12
33	8112890	8136614	NM_018238	AGK		0.676253	2.447084e-15	8.480124e-11	2.569735e-12
34	8112890	8014574	NM_007010	DDX52		0.675574	2.672378e-15	9.260859e-11	2.723782e-12
35	8112890	7902594	NM_182948	PRKACB		0.675219	2.797721e-15	9.695221e-11	2.770063e-12
36	8112890	7926609	NM_005180	BMI1		0.675203	2.803764e-15	9.716165e-11	2.698935e-12
37	8112890	7925792	NM_006624	ZMYND11		0.674333	3.136817e-15	1.087032e-10	2.937926e-12
38	8112890	7967287	NM_017612	ZCCHC8		0.673084	3.682471e-15	1.276123e-10	3.358219e-12
39	8112890	8156718	NM_002486	NCBP1		0.672457	3.990472e-15	1.382858e-10	3.545790e-12
40	8112890	7924351	NM_004446	EPRS		0.672005	4.227881e-15	1.465130e-10	3.662825e-12
41	8112890	8041257	NM_017964	SLC30A6		0.671672	4.411321e-15	1.528699e-10	3.728535e-12
42	8112890	7927936	NM_004728	DDX21		0.671594	4.455054e-15	1.543854e-10	3.675844e-12
43	8112890	8149475	NM_013354	CNOT7		0.671104	4.742248e-15	1.643379e-10	3.821811e-12
44	8112890	7906852	NM_175866	UHMK1		0.670353	5.216362e-15	1.807678e-10	4.108359e-12
45	8164698	8165309	NM_003792	EDF1		0.670140	5.359473e-15	1.857272e-10	4.127271e-12
46	8112890	7906386	NM_152501	PYHIN1		0.669702	5.665110e-15	1.963187e-10	4.267799e-12
47	8112890	8159036	NM_139025	ADAMTS13		-0.669550	5.774841e-15	2.001213e-10	4.257901e-12
48	8112890	7968835	NM_016248	AKAP11		0.668003	7.018597e-15	2.432225e-10	5.067135e-12
49	8112890	7980296	NM_006827	TMED10		0.667204	7.758338e-15	2.688574e-10	5.486886e-12
50	8112890	8108472	NM_005859	PURA		0.666922	8.037952e-15	2.785472e-10	5.570944e-12

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.