[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7005	8089954	NM_001023570	IQCB1		IQ motif containing B1

Fetching correlation data, please wait...
Getting list of correlations for id 7005.
Getting list of p-values for id 7005.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8089954	7969935	NM_000123	ERCC5	0.815753	3.092769e-26	5.358841e-22	5.358841e-22
2	8089954	8055060	NM_018383	WDR33	0.806723	2.842903e-25	4.925899e-21	2.462949e-21
3	8089954	7968898	BC039586	KIAA1704	0.802285	8.106645e-25	1.404638e-20	4.682128e-21
4	8089954	8020930	NM_018255	ELP2	0.800320	1.278331e-24	2.214965e-20	5.537412e-21
5	8089954	8041149	NM_015131	WDR43	0.798809	1.808231e-24	3.133123e-20	6.266245e-21
6	8089954	8023165	NM_032124	HDHD2	0.793022	6.645687e-24	1.151498e-19	1.919164e-20
7	8089954	8119080	NM_003017	SRSF3	0.791360	9.584277e-24	1.660668e-19	2.372382e-20
8	8089954	8116534	NM_032765	TRIM52	0.789229	1.525339e-23	2.642955e-19	3.303694e-20
9	8089954	8056766	NM_003705	SLC25A12	0.784394	4.292406e-23	7.437452e-19	8.263835e-20
10	8089954	8092564	NM_004593	TRA2B	0.780610	9.469973e-23	1.640862e-18	1.640862e-19
11	8089954	8136631	NM_003143	SSBP1	0.776873	2.038053e-22	3.531335e-18	3.210305e-19
12	8089954	8128472	NM_006828	ASCC3	0.775928	2.467917e-22	4.276159e-18	3.563466e-19
13	8089954	8135688	NM_016200	NAA38	0.774676	3.175960e-22	5.502986e-18	4.233066e-19
14	8089954	8023735	NM_019022	TMX3	0.772993	4.445756e-22	7.703162e-18	5.502259e-19
15	8089954	8040386	NM_004939	DDX1	0.771121	6.442821e-22	1.116348e-17	7.442318e-19
16	8089954	7925130	NM_005646	TARBP1	0.770825	6.829173e-22	1.183291e-17	7.395568e-19
17	8089954	8039947	NM_006625	SRSF10	0.770038	7.971944e-22	1.381299e-17	8.125287e-19
18	8089954	8018600	NM_014230	SRP68	0.769045	9.679969e-22	1.677248e-17	9.318046e-19
19	8089954	8063283	NM_001316	CSE1L	0.768705	1.034429e-21	1.792356e-17	9.433451e-19
20	8089954	8027416	NM_003796	C19orf2	0.768330	1.112823e-21	1.928188e-17	9.640942e-19
21	8089954	8039010	NM_018260	ZNF701	0.767910	1.207452e-21	2.092151e-17	9.962625e-19
22	8089954	7912852	NM_001412	EIF1AX	0.766632	1.545873e-21	2.678535e-17	1.217516e-18
23	8089954	7925364	NM_018072	HEATR1	0.766580	1.561569e-21	2.705731e-17	1.176405e-18
24	8089954	8020323	NM_003799	RNMT	0.766272	1.656986e-21	2.871060e-17	1.196275e-18
25	8089954	8152465	NM_003756	EIF3H	0.765380	1.966397e-21	3.407177e-17	1.362871e-18
26	8089954	7902382	NM_004582	RABGGTB	0.765031	2.102176e-21	3.642441e-17	1.400939e-18
27	8089954	8113733	NM_153223	CEP120	0.764530	2.313521e-21	4.008637e-17	1.484680e-18
28	8089954	8122409	NM_003630	PEX3	0.764305	2.414768e-21	4.184069e-17	1.494310e-18
29	8089954	8082911	NM_006153	NCK1	0.763613	2.754611e-21	4.772914e-17	1.645832e-18
30	8089954	8091190	NM_001184	ATR	0.763367	2.886326e-21	5.001136e-17	1.667045e-18
31	8089954	7957633	NM_006838	METAP2	0.762933	3.133716e-21	5.429789e-17	1.751545e-18
32	8089954	8043251	NM_017952	PTCD3	0.762927	3.137152e-21	5.435744e-17	1.698670e-18
33	8089954	8135235	NM_004279	PMPCB	0.760891	4.603747e-21	7.976913e-17	2.417246e-18
34	8089954	7985044	NM_173469	UBE2Q2	0.759908	5.532067e-21	9.585413e-17	2.819239e-18
35	8089954	7980923	NM_004239	TRIP11	0.759838	5.605378e-21	9.712438e-17	2.774982e-18
36	8089954	7953878	NM_001004419	CLEC2D	0.759821	5.622823e-21	9.742666e-17	2.706296e-18
37	8089954	7901418	NM_152265	BTF3L4	0.759294	6.202350e-21	1.074681e-16	2.904544e-18
38	8089954	7965022	NM_007043	KRR1	0.759041	6.501733e-21	1.126555e-16	2.964619e-18
39	8089954	8107942	NM_005732	RAD50	0.758438	7.270831e-21	1.259817e-16	3.230300e-18
40	8089954	8144894	NM_018142	INTS10	0.757545	8.574904e-21	1.485774e-16	3.714434e-18
41	8089954	7957106	NM_014515	CNOT2	0.757383	8.834397e-21	1.530736e-16	3.733503e-18
42	8089954	8028227	NM_152604	ZNF383	0.755678	1.207912e-20	2.092949e-16	4.983213e-18
43	8089954	8043861	NM_015904	EIF5B	0.755347	1.283275e-20	2.223531e-16	5.171002e-18
44	8089954	8162850	NM_017746	TEX10	0.755225	1.312058e-20	2.273402e-16	5.166823e-18
45	8089954	7966448	NM_138341	TMEM116	0.755154	1.329095e-20	2.302922e-16	5.117605e-18
46	8089954	8140878	NM_194455	KRIT1	0.755074	1.348821e-20	2.337103e-16	5.080658e-18
47	8089954	7913712	NM_006625	SRSF10	0.754939	1.382357e-20	2.395210e-16	5.096192e-18
48	8089954	8086077	NM_015097	CLASP2	0.754288	1.556081e-20	2.696222e-16	5.617128e-18
49	8089954	7969228	NM_001004127	ALG11	0.754109	1.607460e-20	2.785247e-16	5.684177e-18
50	8089954	7920317	NM_004515	ILF2	0.752938	1.986587e-20	3.442159e-16	6.884317e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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