[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5983	7975602	NM_006821	ACOT2		acyl-CoA thioesterase 2

Fetching correlation data, please wait...
Getting list of correlations for id 5983.
Getting list of p-values for id 5983.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975602	8002102	AF090894		-0.630811	5.503331e-13	9.535621e-9	9.535621e-9
2	7975602	7991989	NM_138769	RHOT2	0.619748	1.803259e-12	3.124507e-8	1.562253e-8
3	7975602	8116316	NM_014275	MGAT4B	0.588454	4.073767e-11	7.058615e-7	2.352872e-7
4	7975602	8030158	NR_027882	BAX	0.575910	1.297401e-10	2.248007e-6	5.620019e-7
5	7975602	7905831	NM_025207	FLAD1	0.575449	1.352644e-10	2.343726e-6	4.687452e-7
6	7975602	8165622	NM_138462	ZMYND19	0.574180	1.516361e-10	2.627398e-6	4.378997e-7
7	7975602	8158177	NM_024112	C9orf16	0.573478	1.615067e-10	2.798426e-6	3.997751e-7
8	7975602	8079079	NM_005385	NKTR	-0.570838	2.044210e-10	3.542002e-6	4.427503e-7
9	7975602	7910372	NM_001010858	RNF187	0.567919	2.646369e-10	4.585363e-6	5.094848e-7
10	7975602	8032761	NM_030662	MAP2K2	0.566475	3.004184e-10	5.205350e-6	5.205350e-7
11	7975602	8027139	NM_003721	RFXANK	0.565871	3.167268e-10	5.487926e-6	4.989023e-7
12	7975602	8033025	NM_020175	DUS3L	0.561334	4.694574e-10	8.134288e-6	6.778573e-7
13	7975602	8068938	NM_003683	RRP1	0.556911	6.851444e-10	1.187150e-5	9.131921e-7
14	7975602	8076563	NM_173467	MCAT	0.556446	7.126875e-10	1.234874e-5	8.820525e-7
15	7975602	7952179	NM_002105	H2AFX	0.556145	7.310843e-10	1.266750e-5	8.444998e-7
16	7975602	8159654	NM_015456	COBRA1	0.553928	8.814016e-10	1.527205e-5	9.545029e-7
17	7975602	7949776	NM_020441	CORO1B	0.552725	9.749499e-10	1.689296e-5	9.937033e-7
18	7975602	8027352			-0.552691	9.776699e-10	1.694009e-5	9.411159e-7
19	7975602	8000217	NM_015092	SMG1	-0.551543	1.076086e-9	1.864534e-5	9.813337e-7
20	7975602	7949746	NM_021173	POLD4	0.551517	1.078383e-9	1.868514e-5	9.342569e-7
21	7975602	8032076	NM_194460	RNF126	0.550634	1.160681e-9	2.011112e-5	9.576723e-7
22	7975602	8036004	NM_004364	CEBPA	0.550417	1.181746e-9	2.047612e-5	9.307326e-7
23	7975602	8003467	NM_001083314	CHMP1A	0.547348	1.522869e-9	2.638675e-5	1.147250e-6
24	7975602	7949836	NM_005851	CDK2AP2	0.546364	1.651016e-9	2.860716e-5	1.191965e-6
25	7975602	7992043	BC001181	FAM173A	0.540345	2.690603e-9	4.662009e-5	1.864803e-6
26	7975602	8004464	NM_172089	TNFSF12-TNFSF13	0.540178	2.726943e-9	4.724975e-5	1.817298e-6
27	7975602	7936011	NM_024040	CUEDC2	0.537559	3.362210e-9	5.825701e-5	2.157667e-6
28	7975602	8134880	NM_023948	MOSPD3	0.535228	4.045107e-9	7.008956e-5	2.503199e-6
29	7975602	8024273	NM_024407	NDUFS7	0.534620	4.243810e-9	7.353249e-5	2.535603e-6
30	7975602	8030321	NM_153329	ALDH16A1	0.534481	4.290878e-9	7.434804e-5	2.478268e-6
31	7975602	7992795	NM_024339	THOC6	0.532454	5.031299e-9	8.717733e-5	2.812172e-6
32	7975602	7901967	ENST00000411252		0.531974	5.223949e-9	9.051536e-5	2.828605e-6
33	7975602	8018297	NM_014595	NT5C	0.531886	5.260044e-9	9.114078e-5	2.761842e-6
34	7975602	8177011	NM_004192	ASMTL	0.531814	5.289961e-9	9.165915e-5	2.695857e-6
35	7975602	7896754	AK290103	LOC100287934	-0.531760	5.311930e-9	9.203982e-5	2.629709e-6
36	7975602	7994006	NM_015092	SMG1	-0.531702	5.336055e-9	9.245782e-5	2.568273e-6
37	7975602	8015759	NM_006373	VAT1	0.531625	5.368398e-9	9.301823e-5	2.514006e-6
38	7975602	8074020	NM_031454	SELO	0.528543	6.821184e-9	1.181906e-4	3.110280e-6
39	7975602	8072407	NR_002323	TUG1	-0.527153	7.593465e-9	1.315720e-4	3.373640e-6
40	7975602	8087634	NM_007275	TUSC2	0.527034	7.663398e-9	1.327837e-4	3.319592e-6
41	7975602	7941685	NM_005125	CCS	0.526125	8.217667e-9	1.423875e-4	3.472866e-6
42	7975602	8025368	NM_003083	SNAPC2	0.524888	9.033754e-9	1.565279e-4	3.726854e-6
43	7975602	8012079	NM_004422	DVL2	0.524549	9.270502e-9	1.606300e-4	3.735581e-6
44	7975602	7938629	NM_000922	PDE3B	-0.524529	9.284565e-9	1.608737e-4	3.656220e-6
45	7975602	8095159	ENST00000459077		-0.524186	9.530765e-9	1.651396e-4	3.669768e-6
46	7975602	8036636	NM_012237	SIRT2	0.523201	1.027334e-8	1.780062e-4	3.869700e-6
47	7975602	8048257	NM_015488	PNKD	0.522295	1.100440e-8	1.906733e-4	4.056879e-6
48	7975602	8075276	NM_019103	ZMAT5	0.522201	1.108249e-8	1.920263e-4	4.000548e-6
49	7975602	8164362	NM_025072	PTGES2	0.521184	1.196867e-8	2.073811e-4	4.232267e-6
50	7975602	8087405	NM_201397	GPX1	0.520960	1.217335e-8	2.109277e-4	4.218553e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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