[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4574	7985767	NM_022767	AEN		apoptosis enhancing nuclease

Fetching correlation data, please wait...
Getting list of correlations for id 4574.
Getting list of p-values for id 4574.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7985767	7942123	NM_053056	CCND1	0.622783	1.308198e-12	2.266715e-8	2.266715e-8
2	7985767	7991296	NM_198525	KIF7	0.615622	2.774461e-12	4.807309e-8	2.403654e-8
3	7985767	7977033	NM_030943	AMN	0.609294	5.307477e-12	9.196265e-8	3.065422e-8
4	7985767	7913450	NM_005529	HSPG2	0.605816	7.535032e-12	1.305595e-7	3.263987e-8
5	7985767	7947881	NM_005055	RAPSN	0.605573	7.720825e-12	1.337787e-7	2.675575e-8
6	7985767	7945550	NM_018494	LRDD	0.604689	8.433968e-12	1.461354e-7	2.435589e-8
7	7985767	7995088	NM_001008274	TRIM72	0.600271	1.305998e-11	2.262903e-7	3.232719e-8
8	7985767	8067530	BC093856	C20orf200	0.596463	1.893982e-11	3.281703e-7	4.102128e-8
9	7985767	7938738	NM_004976	KCNC1	0.596034	1.974300e-11	3.420869e-7	3.800966e-8
10	7985767	8151125	ENST00000340798		0.593999	2.402616e-11	4.163013e-7	4.163013e-8
11	7985767	7998910	NM_001103175	CCDC64B	0.589604	3.654421e-11	6.332016e-7	5.756378e-8
12	7985767	7994052	NM_006043	HS3ST2	0.589070	3.843701e-11	6.659981e-7	5.549984e-8
13	7985767	7899265	NM_006142	SFN	0.586635	4.833987e-11	8.375848e-7	6.442960e-8
14	7985767	8172580	NM_005183	CACNA1F	0.586234	5.018749e-11	8.695986e-7	6.211419e-8
15	7985767	7924465	NM_024746	HHIPL2	0.585936	5.160802e-11	8.942121e-7	5.961414e-8
16	7985767	8029950	NM_014601	EHD2	0.580103	8.856962e-11	1.534646e-6	9.591537e-8
17	7985767	7929945	ENST00000437253		0.579406	9.440742e-11	1.635797e-6	9.622337e-8
18	7985767	8064059	NM_020882	COL20A1	0.579123	9.688785e-11	1.678776e-6	9.326532e-8
19	7985767	8005328	NM_016239	MYO15A	0.578136	1.060126e-10	1.836880e-6	9.667789e-8
20	7985767	7950726	NM_175885	FAM181B	0.576427	1.238216e-10	2.145457e-6	1.072728e-7
21	7985767	8065576	NM_004118	FOXS1	0.576410	1.240046e-10	2.148627e-6	1.023156e-7
22	7985767	7898377	NM_014675	CROCC	0.576227	1.260768e-10	2.184532e-6	9.929693e-8
23	7985767	7928189	NM_170744	UNC5B	0.576023	1.284279e-10	2.225270e-6	9.675089e-8
24	7985767	8141228	NM_001134450	TMEM130	0.575964	1.291187e-10	2.237239e-6	9.321829e-8
25	7985767	7929840	NM_003987	PAX2	0.574221	1.510786e-10	2.617739e-6	1.047096e-7
26	7985767	7897416	NM_001080397	SLC45A1	0.573919	1.552456e-10	2.689940e-6	1.034592e-7
27	7985767	8037179	NM_032488	CNFN	0.572612	1.745240e-10	3.023978e-6	1.119992e-7
28	7985767	8087453	NM_198722	AMIGO3	0.572538	1.756854e-10	3.044101e-6	1.087179e-7
29	7985767	7966189	NM_213596	FOXN4	0.571650	1.901812e-10	3.295269e-6	1.136300e-7
30	7985767	7950555	NM_001128922	LRRC32	0.571536	1.921105e-10	3.328698e-6	1.109566e-7
31	7985767	8062108	NM_006404	PROCR	0.571158	1.986960e-10	3.442805e-6	1.110582e-7
32	7985767	8073449	NM_014460	CSDC2	0.570685	2.072297e-10	3.590669e-6	1.122084e-7
33	7985767	8155083	NM_001216	CA9	0.570682	2.072839e-10	3.591608e-6	1.088366e-7
34	7985767	8174469	NM_012282	KCNE1L	0.570573	2.092889e-10	3.626349e-6	1.066573e-7
35	7985767	7932911	NM_004521	KIF5B	-0.570109	2.180923e-10	3.778886e-6	1.079682e-7
36	7985767	8070010	NM_003895	SYNJ1	-0.569883	2.225077e-10	3.855391e-6	1.070942e-7
37	7985767	7949857	NM_181843	NUDT8	0.569637	2.274098e-10	3.940330e-6	1.064954e-7
38	7985767	8138689	NM_003930	SKAP2	-0.568761	2.457164e-10	4.257528e-6	1.120402e-7
39	7985767	8044109	NM_006236	POU3F3	0.568526	2.508567e-10	4.346594e-6	1.114511e-7
40	7985767	7990191	NM_052840	CELF6	0.568405	2.535569e-10	4.393380e-6	1.098345e-7
41	7985767	7923628	NM_198447	GOLT1A	0.568354	2.546989e-10	4.413168e-6	1.076382e-7
42	7985767	8010841	NM_022158	FN3K	0.567073	2.850783e-10	4.939551e-6	1.176084e-7
43	7985767	7942717	NM_000260	MYO7A	0.566480	3.002709e-10	5.202794e-6	1.209952e-7
44	7985767	8067798	NM_018419	SOX18	0.566228	3.069645e-10	5.318774e-6	1.208812e-7
45	7985767	8168045	NM_004429	EFNB1	0.564881	3.452836e-10	5.982730e-6	1.329496e-7
46	7985767	7998280	NM_032259	WDR24	0.564697	3.508751e-10	6.079612e-6	1.321655e-7
47	7985767	8063923	NM_016354	SLCO4A1	0.563826	3.784807e-10	6.557935e-6	1.395305e-7
48	7985767	7898556	NM_001040125	PQLC2	0.563622	3.852480e-10	6.675192e-6	1.390665e-7
49	7985767	8092978	NM_018406	MUC4	0.563514	3.888679e-10	6.737915e-6	1.375085e-7
50	7985767	8155883	NM_012383	OSTF1	-0.563480	3.900153e-10	6.757795e-6	1.351559e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation