[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
14582	8118158	NM_004847	AIF1		allograft inflammatory factor 1
14583	8177996	NM_004847	AIF1		allograft inflammatory factor 1
14584	8179276	NM_004847	AIF1		allograft inflammatory factor 1

Fetching correlation data, please wait...
Getting list of correlations for id 14582.
Getting list of p-values for id 14582.
1 of 3 done.
Getting list of correlations for id 14583.
Getting list of p-values for id 14583.
2 of 3 done.
Getting list of correlations for id 14584.
Getting list of p-values for id 14584.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.263 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118158	8177996	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179276	8118158	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179276	8177996	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8118158	8179276	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8177996	8118158	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8177996	8179276	NM_004847	AIF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8177996	8155849	NM_000700	ANXA1	0.670290	5.258635e-15	2.733491e-10	3.904987e-11
8	8179276	8155849	NM_000700	ANXA1	0.670290	5.258635e-15	2.733491e-10	3.416864e-11
9	8118158	8155849	NM_000700	ANXA1	0.670290	5.258635e-15	2.733491e-10	3.037212e-11
10	8118158	8056102	NM_014880	CD302	0.664607	1.072482e-14	5.574869e-10	5.574869e-11
11	8177996	8056102	NM_014880	CD302	0.664607	1.072482e-14	5.574869e-10	5.068062e-11
12	8179276	8056102	NM_014880	CD302	0.664607	1.072482e-14	5.574869e-10	4.645724e-11
13	8177996	8179268	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	1.136786e-10
14	8179276	8118149	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	1.055587e-10
15	8179276	8179268	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	9.852148e-11
16	8179276	8177988	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	9.236389e-11
17	8177996	8118149	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	8.693072e-11
18	8177996	8177988	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	8.210123e-11
19	8118158	8118149	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	7.778012e-11
20	8118158	8177988	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	7.389111e-11
21	8118158	8179268	NM_007161	LST1	0.656629	2.843005e-14	1.477822e-9	7.037249e-11
22	8118158	7966315	NM_005719	ARPC3	0.646805	9.076513e-14	4.718062e-9	2.144574e-10
23	8177996	7966315	NM_005719	ARPC3	0.646805	9.076513e-14	4.718062e-9	2.051331e-10
24	8179276	7966315	NM_005719	ARPC3	0.646805	9.076513e-14	4.718062e-9	1.965859e-10
25	8179276	8063313	ENST00000437218		0.644143	1.234238e-13	6.415692e-9	2.566277e-10
26	8118158	8063313	ENST00000437218		0.644143	1.234238e-13	6.415692e-9	2.467574e-10
27	8177996	8063313	ENST00000437218		0.644143	1.234238e-13	6.415692e-9	2.376182e-10
28	8177996	7948455	NM_152852	MS4A6A	0.637101	2.743273e-13	1.425981e-8	5.092789e-10
29	8179276	7948455	NM_152852	MS4A6A	0.637101	2.743273e-13	1.425981e-8	4.917176e-10
30	8118158	7948455	NM_152852	MS4A6A	0.637101	2.743273e-13	1.425981e-8	4.753270e-10
31	8118158	8118667	ENST00000416347		0.633704	4.003146e-13	2.080876e-8	6.712502e-10
32	8177996	8118667	ENST00000416347		0.633704	4.003146e-13	2.080876e-8	6.502736e-10
33	8179276	8118667	ENST00000416347		0.633704	4.003146e-13	2.080876e-8	6.305683e-10
34	8118158	7951372	NM_033306	CASP4	0.632122	4.765964e-13	2.477396e-8	7.286458e-10
35	8177996	7951372	NM_033306	CASP4	0.632122	4.765964e-13	2.477396e-8	7.078274e-10
36	8179276	7951372	NM_033306	CASP4	0.632122	4.765964e-13	2.477396e-8	6.881655e-10
37	8118158	8168087	NM_001551	IGBP1	0.628831	6.828988e-13	3.549776e-8	9.593989e-10
38	8179276	8168087	NM_001551	IGBP1	0.628831	6.828988e-13	3.549776e-8	9.341516e-10
39	8177996	8168087	NM_001551	IGBP1	0.628831	6.828988e-13	3.549776e-8	9.101990e-10
40	8177996	8068254	NM_000628	IL10RB	0.624748	1.060830e-12	5.514302e-8	1.378575e-9
41	8179276	8068254	NM_000628	IL10RB	0.624748	1.060830e-12	5.514302e-8	1.344952e-9
42	8118158	8068254	NM_000628	IL10RB	0.624748	1.060830e-12	5.514302e-8	1.312929e-9
43	8177996	7906720	NM_004106	FCER1G	0.623662	1.191300e-12	6.192495e-8	1.440115e-9
44	8118158	7906720	NM_004106	FCER1G	0.623662	1.191300e-12	6.192495e-8	1.407385e-9
45	8179276	7906720	NM_004106	FCER1G	0.623662	1.191300e-12	6.192495e-8	1.376110e-9
46	8177996	7957260	NM_006851	GLIPR1	0.621802	1.451757e-12	7.546377e-8	1.640517e-9
47	8118158	7957260	NM_006851	GLIPR1	0.621802	1.451757e-12	7.546377e-8	1.605612e-9
48	8179276	7957260	NM_006851	GLIPR1	0.621802	1.451757e-12	7.546377e-8	1.572162e-9
49	8177996	8082035	NM_175862	CD86	0.621485	1.501397e-12	7.804412e-8	1.592737e-9
50	8179276	8082035	NM_175862	CD86	0.621485	1.501397e-12	7.804412e-8	1.560882e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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