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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16239.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16239 8179268 NM_007161 LST1 link to infopage leukocyte specific transcript 1

Fetching correlation data, please wait...
Getting list of correlations for id 16239.
Getting list of p-values for id 16239.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8179268 8177988 NM_007161 LST1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8179268 8118149 NM_007161 LST1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8179268 8036224 NM_003332 TYROBP link to infopage 0.758275 7.493476e-21 1.298395e-16 4.327982e-17
4 8179268 7964360 NM_003153 STAT6 link to infopage 0.738257 2.566120e-19 4.446317e-15 1.111579e-15
5 8179268 8061668 NM_002110 HCK link to infopage 0.710112 2.212032e-17 3.832787e-13 7.665574e-14
6 8179268 7956593 NM_006812 OS9 link to infopage 0.709892 2.285542e-17 3.960158e-13 6.600263e-14
7 8179268 8006812 NM_002795 PSMB3 link to infopage 0.706166 3.961665e-17 6.864378e-13 9.806254e-14
8 8179268 7897620 NM_002631 PGD link to infopage 0.705392 4.435905e-17 7.686093e-13 9.607617e-14
9 8179268 7920128 NM_005620 S100A11 link to infopage 0.698650 1.170795e-16 2.028637e-12 2.254041e-13
10 8179268 8027996 NM_172341 PSENEN link to infopage 0.694245 2.175741e-16 3.769906e-12 3.769906e-13
11 8179268 8086961 NM_004567 PFKFB4 link to infopage 0.692004 2.969821e-16 5.145809e-12 4.678008e-13
12 8179268 7960689 NR_026581 MLF2 link to infopage 0.691077 3.374638e-16 5.847235e-12 4.872696e-13
13 8179268 8094830 NM_018126 TMEM33 link to infopage 0.683855 8.989941e-16 1.557687e-11 1.198221e-12
14 8179268 8008096 NM_152244 SNX11 link to infopage 0.681391 1.247772e-15 2.162015e-11 1.544296e-12
15 8179268 8030782 NM_014441 SIGLEC9 link to infopage 0.678203 1.898079e-15 3.288802e-11 2.192535e-12
16 8179268 8172333 NM_002621 CFP link to infopage 0.677857 1.986083e-15 3.441286e-11 2.150804e-12
17 8179268 8082431 NM_004637 RAB7A link to infopage 0.677154 2.176795e-15 3.771733e-11 2.218666e-12
18 8179268 7980146 NM_006432 NPC2 link to infopage 0.670447 5.154627e-15 8.931423e-11 4.961902e-12
19 8179268 7906720 NM_004106 FCER1G link to infopage 0.666944 8.015058e-15 1.388769e-10 7.309311e-12
20 8179268 7975361 NM_014734 KIAA0247 link to infopage 0.665514 9.581481e-15 1.660183e-10 8.300916e-12
21 8179268 7952022 NM_001098526 AMICA1 link to infopage 0.662067 1.467608e-14 2.542924e-10 1.210916e-11
22 8179268 8004237 NM_001004333 RNASEK link to infopage 0.661930 1.492470e-14 2.586002e-10 1.175456e-11
23 8179268 8088106 NM_001135055 TKT link to infopage 0.660039 1.880882e-14 3.259004e-10 1.416958e-11
24 8179268 7977786 NM_003982 SLC7A7 link to infopage 0.659704 1.959405e-14 3.395062e-10 1.414609e-11
25 8179268 7945962 NM_003141 TRIM21 link to infopage 0.659335 2.049286e-14 3.550797e-10 1.420319e-11
26 8179268 8033300 NM_001080452 GPR108 link to infopage 0.659307 2.056329e-14 3.563002e-10 1.370385e-11
27 8179268 7922773 NM_000433 NCF2 link to infopage 0.658113 2.376727e-14 4.118155e-10 1.525243e-11
28 8179268 8118158 NM_004847 AIF1 link to infopage 0.656629 2.843005e-14 4.926074e-10 1.759312e-11
29 8179268 8177996 NM_004847 AIF1 link to infopage 0.656629 2.843005e-14 4.926074e-10 1.698646e-11
30 8179268 8179276 NM_004847 AIF1 link to infopage 0.656629 2.843005e-14 4.926074e-10 1.642025e-11
31 8179268 7914112 NM_005248 FGR link to infopage 0.652441 4.687571e-14 8.122154e-10 2.620050e-11
32 8179268 8002041 NM_004691 ATP6V0D1 link to infopage 0.647331 8.538603e-14 1.479484e-9 4.623387e-11
33 8179268 8134814 NM_013439 PILRA link to infopage 0.646229 9.703067e-14 1.681250e-9 5.094698e-11
34 8179268 7921713 NM_016946 F11R link to infopage 0.643854 1.275937e-13 2.210816e-9 6.502401e-11
35 8179268 7953569 NM_080549 PTPN6 link to infopage 0.643635 1.308448e-13 2.267148e-9 6.477566e-11
36 8179268 7965335 NM_001946 DUSP6 link to infopage 0.642440 1.500045e-13 2.599128e-9 7.219799e-11
37 8179268 8136557 NM_001130966 TBXAS1 link to infopage 0.642269 1.529668e-13 2.650455e-9 7.163393e-11
38 8179268 7948493 NM_016582 SLC15A3 link to infopage 0.641401 1.688531e-13 2.925718e-9 7.699258e-11
39 8179268 8013741 NM_006923 SDF2 link to infopage 0.635609 3.240461e-13 5.614747e-9 1.439679e-10
40 8179268 7945182 NM_001642 APLP2 link to infopage 0.633685 4.011790e-13 6.951228e-9 1.737807e-10
41 8179268 8163452 NM_015258 FKBP15 link to infopage 0.633504 4.092880e-13 7.091733e-9 1.729691e-10
42 8179268 8077652 NM_005718 ARPC4 link to infopage 0.631408 5.154730e-13 8.931601e-9 2.126572e-10
43 8179268 8080487 NM_006254 PRKCD link to infopage 0.631402 5.158367e-13 8.937903e-9 2.078582e-10
44 8179268 8062041 NM_018677 ACSS2 link to infopage 0.631250 5.244627e-13 9.087365e-9 2.065310e-10
45 8179268 7937735 NM_002339 LSP1 link to infopage 0.630875 5.464822e-13 9.468897e-9 2.104199e-10
46 8179268 8035553 NM_007263 COPE link to infopage 0.628363 7.185107e-13 1.244964e-8 2.706443e-10
47 8179268 8077550 NM_001077525 MTMR14 link to infopage 0.627615 7.791847e-13 1.350093e-8 2.872539e-10
48 8179268 8018761 NM_006456 ST6GALNAC2 link to infopage 0.625980 9.294722e-13 1.610497e-8 3.355201e-10
49 8179268 7911600 NM_023018 NADK link to infopage 0.625473 9.814356e-13 1.700533e-8 3.470476e-10
50 8179268 8072659 NR_024194 TOM1 link to infopage 0.624806 1.054223e-12 1.826653e-8 3.653305e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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