[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1030	8160602	NM_175069	APTX		aprataxin

Fetching correlation data, please wait...
Getting list of correlations for id 1030.
Getting list of p-values for id 1030.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8160602	8112182	NM_152622	MIER3	0.577637	1.109458e-10	1.922357e-6	1.922357e-6
2	8160602	7936891	NM_212554	METTL10	0.564174	3.672116e-10	6.362675e-6	3.181338e-6
3	8160602	7904883	NM_004284	CHD1L	0.564048	3.712456e-10	6.432572e-6	2.144191e-6
4	8160602	7935027	NM_004969	IDE	0.555844	7.499436e-10	1.299427e-5	3.248568e-6
5	8160602	8056693	NM_024622	FASTKD1	0.548470	1.388442e-9	2.405753e-5	4.811506e-6
6	8160602	8089954	NM_001023570	IQCB1	0.547601	1.491508e-9	2.584336e-5	4.307227e-6
7	8160602	8065165	NM_152227	SNX5	0.540562	2.644043e-9	4.581333e-5	6.544761e-6
8	8160602	8145782	NM_032509	MAK16	0.539786	2.814190e-9	4.876148e-5	6.095185e-6
9	8160602	7915015	NM_013285	GNL2	0.529793	6.191788e-9	1.072851e-4	1.192057e-5
10	8160602	8066136	NM_002895	RBL1	0.525616	8.544716e-9	1.480543e-4	1.480543e-5
11	8160602	8047174	NM_001127257	SLC39A10	0.524007	9.661686e-9	1.674080e-4	1.521891e-5
12	8160602	8002523	NM_018348	FTSJD1	0.521873	1.136134e-8	1.968579e-4	1.640482e-5
13	8160602	7959623	NM_001516	GTF2H3	0.521292	1.187132e-8	2.056943e-4	1.582264e-5
14	8160602	8152465	NM_003756	EIF3H	0.520351	1.274425e-8	2.208197e-4	1.577283e-5
15	8160602	8102162	NM_020395	INTS12	0.520118	1.296984e-8	2.247284e-4	1.498189e-5
16	8160602	7969228	NM_001004127	ALG11	0.516561	1.692424e-8	2.932463e-4	1.832789e-5
17	8160602	8104422	NM_002454	MTRR	0.516175	1.741752e-8	3.017934e-4	1.775255e-5
18	8160602	7966448	NM_138341	TMEM116	0.516056	1.757189e-8	3.044682e-4	1.691490e-5
19	8160602	8047815	NM_001136194	FASTKD2	0.515556	1.823530e-8	3.159630e-4	1.662963e-5
20	8160602	8124307	NR_002174	CMAH	0.515070	1.890390e-8	3.275479e-4	1.637739e-5
21	8160602	7924558	NM_002533	NVL	0.514725	1.939328e-8	3.360273e-4	1.600130e-5
22	8160602	7966534	NM_001024662	RPL6	0.514018	2.043249e-8	3.540338e-4	1.609245e-5
23	8160602	7951447	NM_152434	CWF19L2	0.513586	2.109457e-8	3.655056e-4	1.589155e-5
24	8160602	8108163	NM_152409	C5orf24	0.513510	2.121194e-8	3.675393e-4	1.531414e-5
25	8160602	7918657	NM_015967	PTPN22	0.512897	2.219187e-8	3.845185e-4	1.538074e-5
26	8160602	8041967	NM_015701	ERLEC1	0.512048	2.361891e-8	4.092448e-4	1.574018e-5
27	8160602	7970569	NM_014363	SACS	0.511965	2.376207e-8	4.117254e-4	1.524909e-5
28	8160602	8022170	NM_001024662	RPL6	0.511679	2.426453e-8	4.204316e-4	1.501541e-5
29	8160602	8008530	NM_016001	UTP18	0.511311	2.492813e-8	4.319297e-4	1.489413e-5
30	8160602	8080419	NM_206825	GNL3	0.510646	2.616817e-8	4.534158e-4	1.511386e-5
31	8160602	7971541	NM_003850	SUCLA2	0.510124	2.718432e-8	4.710227e-4	1.519428e-5
32	8160602	7961964	NM_018164	C12orf11	0.509994	2.744348e-8	4.755131e-4	1.485978e-5
33	8160602	8123507	NM_003194	TBP	0.509891	2.764842e-8	4.790641e-4	1.451709e-5
34	8160602	7975292	NM_002877	RAD51L1	0.508569	3.043748e-8	5.273902e-4	1.551148e-5
35	8160602	7918847	NM_001102396	SIKE1	0.508383	3.084971e-8	5.345330e-4	1.527237e-5
36	8160602	8144361	NM_024596	MCPH1	0.507679	3.246316e-8	5.624892e-4	1.562470e-5
37	8160602	8140878	NM_194455	KRIT1	0.507607	3.263232e-8	5.654202e-4	1.528163e-5
38	8160602	8135323	NM_021930	RINT1	0.507212	3.357594e-8	5.817703e-4	1.530975e-5
39	8160602	8026007	NM_153358	ZNF791	0.507210	3.358005e-8	5.818415e-4	1.491901e-5
40	8160602	7925823	NM_012341	GTPBP4	0.506447	3.547945e-8	6.147524e-4	1.536881e-5
41	8160602	7918008	NM_001918	DBT	0.505892	3.692467e-8	6.397938e-4	1.560473e-5
42	8160602	8040142	NM_016207	CPSF3	0.503262	4.457171e-8	7.722940e-4	1.838795e-5
43	8160602	7968898	BC039586	KIAA1704	0.503155	4.491473e-8	7.782376e-4	1.809855e-5
44	8160602	7989883	ENST00000459325		0.500191	5.541911e-8	9.602469e-4	2.182379e-5
45	8160602	7994237	NM_016309	LCMT1	0.500106	5.575306e-8	9.660333e-4	2.146741e-5
46	8160602	8166230	NM_018360	TXLNG	0.499869	5.669207e-8	9.823035e-4	2.135442e-5
47	8160602	8025998	NM_003437	ZNF136	0.499650	5.757353e-8	9.975766e-4	2.122503e-5
48	8160602	8023191	NM_005901	SMAD2	0.498627	6.187030e-8	1.072027e-3	2.233389e-5
49	8160602	8077513	NM_015453	THUMPD3	0.498614	6.192629e-8	1.072997e-3	2.189789e-5
50	8160602	7923007	NM_015984	UCHL5	0.498162	6.392298e-8	1.107593e-3	2.215187e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation