[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2998	8124307	NR_002174	CMAH		cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 2998.
Getting list of p-values for id 2998.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124307	8027416	NM_003796	C19orf2	0.727282	1.558267e-18	2.700010e-14	2.700010e-14
2	8124307	7969935	NM_000123	ERCC5	0.722985	3.083376e-18	5.342565e-14	2.671283e-14
3	8124307	8091190	NM_001184	ATR	0.717638	7.083972e-18	1.227440e-13	4.091466e-14
4	8124307	8157534	NM_007018	CEP110	0.710882	1.971953e-17	3.416803e-13	8.542007e-14
5	8124307	8041179	NM_024692	CLIP4	0.710566	2.067261e-17	3.581944e-13	7.163887e-14
6	8124307	8092035	NM_024947	PHC3	0.708386	2.857497e-17	4.951184e-13	8.251974e-14
7	8124307	8140878	NM_194455	KRIT1	0.708197	2.938306e-17	5.091203e-13	7.273147e-14
8	8124307	8023133	NM_004671	PIAS2	0.707013	3.498676e-17	6.062156e-13	7.577695e-14
9	8124307	8050658	NM_017552	ATAD2B	0.706052	4.028110e-17	6.979507e-13	7.755008e-14
10	8124307	8099860	NM_002913	RFC1	0.703345	5.973152e-17	1.034968e-12	1.034968e-13
11	8124307	7954940	NM_016488	PPHLN1	0.703253	6.053359e-17	1.048866e-12	9.535142e-14
12	8124307	8134180	NM_019004	ANKIB1	0.702459	6.789329e-17	1.176387e-12	9.803226e-14
13	8124307	8050367	NM_015909	NBAS	0.701843	7.419131e-17	1.285513e-12	9.888561e-14
14	8124307	7951008	NM_024116	TAF1D	0.701815	7.448916e-17	1.290674e-12	9.219098e-14
15	8124307	7987981	NM_174916	UBR1	0.700361	9.175386e-17	1.589819e-12	1.059879e-13
16	8124307	7953878	NM_001004419	CLEC2D	0.698950	1.121961e-16	1.944021e-12	1.215013e-13
17	8124307	8045619	NM_015630	EPC2	0.698402	1.212827e-16	2.101465e-12	1.236156e-13
18	8124307	7971820	NM_016075	VPS36	0.698215	1.245345e-16	2.157809e-12	1.198783e-13
19	8124307	8070102	NM_000819	GART	0.696780	1.525198e-16	2.642711e-12	1.390900e-13
20	8124307	7995583	NM_025134	CHD9	0.694672	2.049846e-16	3.551769e-12	1.775884e-13
21	8124307	7989253	NM_024755	SLTM	0.694238	2.177922e-16	3.773685e-12	1.796993e-13
22	8124307	8022393	NM_002828	PTPN2	0.694175	2.197332e-16	3.807317e-12	1.730599e-13
23	8124307	7909992	NM_015176	FBXO28	0.693933	2.272400e-16	3.937388e-12	1.711908e-13
24	8124307	8128472	NM_006828	ASCC3	0.693718	2.341441e-16	4.057014e-12	1.690423e-13
25	8124307	8113733	NM_153223	CEP120	0.693454	2.429227e-16	4.209121e-12	1.683648e-13
26	8124307	8078600	NM_006756	TCEA1	0.693285	2.486928e-16	4.309101e-12	1.657347e-13
27	8124307	8154531	NM_017925	DENND4C	0.692232	2.877441e-16	4.985742e-12	1.846571e-13
28	8124307	7969114	NM_031915	SETDB2	0.691626	3.128785e-16	5.421245e-12	1.936159e-13
29	8124307	7903519	NM_018061	PRPF38B	0.691049	3.387793e-16	5.870028e-12	2.024148e-13
30	8124307	8134122	NM_005751	AKAP9	0.690831	3.491012e-16	6.048876e-12	2.016292e-13
31	8124307	8092564	NM_004593	TRA2B	0.689982	3.922473e-16	6.796469e-12	2.192410e-13
32	8124307	8130038	NM_001042683	SHPRH	0.688717	4.662652e-16	8.078978e-12	2.524681e-13
33	8124307	8156718	NM_002486	NCBP1	0.688605	4.734534e-16	8.203527e-12	2.485917e-13
34	8124307	7923141	NM_144977	DENND1B	0.688281	4.948152e-16	8.573664e-12	2.521666e-13
35	8124307	7951046	NM_005591	MRE11A	0.687915	5.200855e-16	9.011521e-12	2.574720e-13
36	8124307	7936346	NM_022494	ZDHHC6	0.687684	5.366475e-16	9.298491e-12	2.582914e-13
37	8124307	7968898	BC039586	KIAA1704	0.687667	5.378405e-16	9.319162e-12	2.518692e-13
38	8124307	7982957	NM_001080541	MGA	0.687609	5.421096e-16	9.393132e-12	2.471877e-13
39	8124307	8161632	NM_001099666	PTAR1	0.687384	5.589578e-16	9.685062e-12	2.483349e-13
40	8124307	8151066	NM_018120	ARMC1	0.687060	5.840292e-16	1.011947e-11	2.529869e-13
41	8124307	8047815	NM_001136194	FASTKD2	0.686837	6.019507e-16	1.043000e-11	2.543902e-13
42	8124307	8100292	NM_015030	FRYL	0.686797	6.051503e-16	1.048544e-11	2.496533e-13
43	8124307	8088219	NM_001112736	C3orf63	0.686613	6.204189e-16	1.075000e-11	2.500000e-13
44	8124307	7974066	NM_002687	PNN	0.686264	6.503711e-16	1.126898e-11	2.561132e-13
45	8124307	8152782	NM_014846	KIAA0196	0.686238	6.526874e-16	1.130911e-11	2.513137e-13
46	8124307	7967386	NM_022782	MPHOSPH9	0.685764	6.958108e-16	1.205631e-11	2.620938e-13
47	8124307	7971246	NM_015058	KIAA0564	0.685711	7.007958e-16	1.214269e-11	2.583551e-13
48	8124307	8111629	NM_153485	NUP155	0.685488	7.220784e-16	1.251145e-11	2.606553e-13
49	8124307	8107474	NM_005509	DMXL1	0.684089	8.713164e-16	1.509730e-11	3.081082e-13
50	8124307	8175492	NM_173694	ATP11C	0.684019	8.794961e-16	1.523903e-11	3.047806e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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