[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5083	8031700	NM_001015878	AURKC		aurora kinase C

Fetching correlation data, please wait...
Getting list of correlations for id 5083.
Getting list of p-values for id 5083.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031700	8010287	NM_030968	C1QTNF1	0.709120	2.563174e-17	4.441212e-13	4.441212e-13
2	8031700	8067551	ENST00000415185		0.706689	3.668828e-17	6.356979e-13	3.178489e-13
3	8031700	7992302	NM_020825	CRAMP1L	0.699119	1.095265e-16	1.897765e-12	6.325885e-13
4	8031700	7987701	NM_016642	SPTBN5	0.693922	2.276141e-16	3.943870e-12	9.859675e-13
5	8031700	8042513	ENST00000459231		0.684926	7.787532e-16	1.349346e-11	2.698691e-12
6	8031700	7913226	NM_012400	PLA2G2D	0.680986	1.316460e-15	2.281030e-11	3.801717e-12
7	8031700	7910618	NM_173508	SLC35F3	0.680516	1.400836e-15	2.427229e-11	3.467470e-12
8	8031700	8049071			0.675961	2.541638e-15	4.403897e-11	5.504871e-12
9	8031700	7995334			0.669883	5.537057e-15	9.594058e-11	1.066006e-11
10	8031700	8075934	NM_014550	CARD10	0.668813	6.337756e-15	1.098143e-10	1.098143e-11
11	8031700	8006896	NM_003673	TCAP	0.668807	6.342784e-15	1.099014e-10	9.991038e-12
12	8031700	8027665	NM_001080436	WTIP	0.668219	6.830688e-15	1.183553e-10	9.862944e-12
13	8031700	7919582	XR_039086	LOC100133075	0.668214	6.834685e-15	1.184246e-10	9.109584e-12
14	8031700	7989887	NM_032445	MEGF11	0.667899	7.111069e-15	1.232135e-10	8.800964e-12
15	8031700	8043522	NM_144707	PROM2	0.666719	8.244028e-15	1.428443e-10	9.522952e-12
16	8031700	8002939	ENST00000362429		0.666058	8.953873e-15	1.551438e-10	9.696485e-12
17	8031700	8029446	NM_001127893	CEACAM19	0.666050	8.963065e-15	1.553030e-10	9.135472e-12
18	8031700	8136837	NM_001001667	OR6V1	0.662908	1.323227e-14	2.292756e-10	1.273753e-11
19	8031700	7914433	NM_001703	BAI2	0.659990	1.892157e-14	3.278541e-10	1.725548e-11
20	8031700	7937713	NM_138567	SYT8	0.657861	2.450472e-14	4.245932e-10	2.122966e-11
21	8031700	8032839	NM_032108	SEMA6B	0.657361	2.603052e-14	4.510308e-10	2.147766e-11
22	8031700	8024605	NM_021938	CELF5	0.657206	2.651918e-14	4.594978e-10	2.088626e-11
23	8031700	8062064	NM_020884	MYH7B	0.656725	2.810456e-14	4.869677e-10	2.117251e-11
24	8031700	8080128	NM_000839	GRM2	0.656327	2.948133e-14	5.108230e-10	2.128429e-11
25	8031700	8062796	NM_024034	GDAP1L1	0.655304	3.333090e-14	5.775246e-10	2.310098e-11
26	8031700	7953150	NM_003213	TEAD4	0.654609	3.622092e-14	6.275998e-10	2.413845e-11
27	8031700	8064108	BC000912	C20orf195	0.654307	3.755048e-14	6.506372e-10	2.409767e-11
28	8031700	8003875	NM_001124758	SPNS2	0.653839	3.970563e-14	6.879795e-10	2.457070e-11
29	8031700	8175815	NM_001039582	PNCK	0.653600	4.084878e-14	7.077868e-10	2.440644e-11
30	8031700	7942123	NM_053056	CCND1	0.653429	4.169163e-14	7.223908e-10	2.407969e-11
31	8031700	8086540	NM_020208	SLC6A20	0.652847	4.467650e-14	7.741097e-10	2.497128e-11
32	8031700	8071170	NR_024593	POM121L10P	0.652186	4.831415e-14	8.371394e-10	2.616060e-11
33	8031700	7912316	NM_001079843	CASZ1	0.652100	4.881048e-14	8.457391e-10	2.562846e-11
34	8031700	7904073	NM_001004440	FAM19A3	0.651785	5.066125e-14	8.778074e-10	2.581787e-11
35	8031700	7936144	NM_000494	COL17A1	0.651028	5.539682e-14	9.598607e-10	2.742459e-11
36	8031700	8003193	BC093665	FAM92B	0.650447	5.931661e-14	1.027779e-9	2.854941e-11
37	8031700	7990191	NM_052840	CELF6	0.649408	6.700998e-14	1.161082e-9	3.138059e-11
38	8031700	7921936	NM_177398	LMX1A	0.649215	6.854549e-14	1.187688e-9	3.125494e-11
39	8031700	7977216	NM_015656	KIF26A	0.648873	7.134305e-14	1.236161e-9	3.169644e-11
40	8031700	7897119	AF425266	C1orf93	0.647618	8.258475e-14	1.430946e-9	3.577365e-11
41	8031700	8068145	NM_181605	KRTAP6-3	0.647519	8.354489e-14	1.447582e-9	3.530688e-11
42	8031700	8131506	NM_152745	NXPH1	0.647451	8.420337e-14	1.458992e-9	3.473790e-11
43	8031700	8082465	NM_024768	CCDC48	0.646865	9.014168e-14	1.561885e-9	3.632290e-11
44	8031700	8071745	NM_182520	C22orf15	0.646725	9.161744e-14	1.587455e-9	3.607853e-11
45	8031700	8000467	NM_001109763	GSG1L	0.645272	1.083800e-13	1.877900e-9	4.173111e-11
46	8031700	8064014	NM_022082	SLC17A9	0.645124	1.102456e-13	1.910226e-9	4.152664e-11
47	8031700	8072039	NM_032608	MYO18B	0.645113	1.103845e-13	1.912632e-9	4.069429e-11
48	8031700	8137151	NM_198455	SSPO	0.644756	1.150241e-13	1.993023e-9	4.152131e-11
49	8031700	8130827	AB016899	C6orf54	0.643907	1.268192e-13	2.197397e-9	4.484483e-11
50	8031700	8138450	NM_152898	FERD3L	0.642942	1.416395e-13	2.454188e-9	4.908376e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation