[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15068	8000702	NM_175900	C16orf54		chromosome 16 open reading frame 54
15069	8003601	NM_175900	C16orf54		chromosome 16 open reading frame 54

Fetching correlation data, please wait...
Getting list of correlations for id 15068.
Getting list of p-values for id 15068.
1 of 2 done.
Getting list of correlations for id 15069.
Getting list of p-values for id 15069.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.193 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8000702	8003601	NM_175900	C16orf54	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8003601	8000702	NM_175900	C16orf54	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8003601	7966127	NM_003006	SELPLG	0.730482	9.293897e-19	3.220707e-14	1.073569e-14
4	8000702	7966127	NM_003006	SELPLG	0.730482	9.293897e-19	3.220707e-14	8.051768e-15
5	8003601	7990033	NM_005078	TLE3	0.709561	2.400945e-17	8.320234e-13	1.664047e-13
6	8000702	7990033	NM_005078	TLE3	0.709561	2.400945e-17	8.320234e-13	1.386706e-13
7	8000702	8026300	NM_078481	CD97	0.707159	3.424016e-17	1.186559e-12	1.695084e-13
8	8003601	8026300	NM_078481	CD97	0.707159	3.424016e-17	1.186559e-12	1.483198e-13
9	8003601	8168359	NM_001013627	NHSL2	0.703757	5.627554e-17	1.950173e-12	2.166858e-13
10	8000702	8168359	NM_001013627	NHSL2	0.703757	5.627554e-17	1.950173e-12	1.950173e-13
11	8003601	8042416	NM_014882	ARHGAP25	0.700826	8.584375e-17	2.974829e-12	2.704390e-13
12	8000702	8042416	NM_014882	ARHGAP25	0.700826	8.584375e-17	2.974829e-12	2.479024e-13
13	8000702	8025741	NM_001005360	DNM2	0.679961	1.507072e-15	5.222608e-11	4.017390e-12
14	8003601	8025741	NM_001005360	DNM2	0.679961	1.507072e-15	5.222608e-11	3.730434e-12
15	8000702	8033605	NM_012335	MYO1F	0.676142	2.482817e-15	8.603955e-11	5.735970e-12
16	8003601	8033605	NM_012335	MYO1F	0.676142	2.482817e-15	8.603955e-11	5.377472e-12
17	8000702	7979824	NM_001130004	ACTN1	0.670840	4.903758e-15	1.699348e-10	9.996166e-12
18	8003601	7979824	NM_001130004	ACTN1	0.670840	4.903758e-15	1.699348e-10	9.440824e-12
19	8000702	7931810	NM_001300	KLF6	0.662459	1.398454e-14	4.846204e-10	2.550633e-11
20	8003601	7931810	NM_001300	KLF6	0.662459	1.398454e-14	4.846204e-10	2.423102e-11
21	8003601	8126288	NM_024807	TREML2	0.662301	1.425904e-14	4.941326e-10	2.353012e-11
22	8000702	8126288	NM_024807	TREML2	0.662301	1.425904e-14	4.941326e-10	2.246057e-11
23	8000702	7899394	NM_001105556	C1orf38	0.660651	1.745517e-14	6.048914e-10	2.629963e-11
24	8003601	7899394	NM_001105556	C1orf38	0.660651	1.745517e-14	6.048914e-10	2.520381e-11
25	8003601	7953981	NM_001987	ETV6	0.660127	1.860792e-14	6.448389e-10	2.579356e-11
26	8000702	7953981	NM_001987	ETV6	0.660127	1.860792e-14	6.448389e-10	2.480150e-11
27	8000702	7940798	NM_017490	MARK2	0.656409	2.919415e-14	1.011694e-9	3.747015e-11
28	8003601	7940798	NM_017490	MARK2	0.656409	2.919415e-14	1.011694e-9	3.613193e-11
29	8003601	7986214	NM_013272	SLCO3A1	0.655903	3.102398e-14	1.075105e-9	3.707259e-11
30	8000702	7986214	NM_013272	SLCO3A1	0.655903	3.102398e-14	1.075105e-9	3.583684e-11
31	8000702	8025672	NM_020428	SLC44A2	0.654402	3.712623e-14	1.286572e-9	4.150233e-11
32	8003601	8025672	NM_020428	SLC44A2	0.654402	3.712623e-14	1.286572e-9	4.020539e-11
33	8000702	8146500	NM_002350	LYN	0.653897	3.942998e-14	1.366406e-9	4.140626e-11
34	8003601	8146500	NM_002350	LYN	0.653897	3.942998e-14	1.366406e-9	4.018843e-11
35	8003601	8007023	NM_001012241	MSL1	0.651619	5.166411e-14	1.790368e-9	5.115337e-11
36	8000702	8007023	NM_001012241	MSL1	0.651619	5.166411e-14	1.790368e-9	4.973245e-11
37	8000702	8066848	NM_020820	PREX1	0.648106	7.802194e-14	2.703772e-9	7.307493e-11
38	8003601	8066848	NM_020820	PREX1	0.648106	7.802194e-14	2.703772e-9	7.115191e-11
39	8003601	8039166	NM_024298	MBOAT7	0.642484	1.492540e-13	5.172250e-9	1.326218e-10
40	8000702	8039166	NM_024298	MBOAT7	0.642484	1.492540e-13	5.172250e-9	1.293062e-10
41	8000702	8007212	NM_003152	STAT5A	0.642147	1.550986e-13	5.374786e-9	1.310923e-10
42	8003601	8007212	NM_003152	STAT5A	0.642147	1.550986e-13	5.374786e-9	1.279711e-10
43	8003601	8006820	NM_006148	LASP1	0.641659	1.639748e-13	5.682381e-9	1.321484e-10
44	8000702	8006820	NM_006148	LASP1	0.641659	1.639748e-13	5.682381e-9	1.291450e-10
45	8000702	8033987	NM_002162	ICAM3	0.637521	2.617009e-13	9.068982e-9	2.015329e-10
46	8003601	8033987	NM_002162	ICAM3	0.637521	2.617009e-13	9.068982e-9	1.971518e-10
47	8003601	7970287	NM_005561	LAMP1	0.637433	2.643013e-13	9.159098e-9	1.948744e-10
48	8000702	7970287	NM_005561	LAMP1	0.637433	2.643013e-13	9.159098e-9	1.908145e-10
49	8003601	8162236	NM_006378	SEMA4D	0.636764	2.848618e-13	9.871601e-9	2.014612e-10
50	8000702	8162236	NM_006378	SEMA4D	0.636764	2.848618e-13	9.871601e-9	1.974320e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation