[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2962	8118409	NM_007293	C4A		complement component 4A (Rodgers blood group)
2963	8118455	NM_007293	C4A		complement component 4A (Rodgers blood group)
2964	8179399	NM_007293	C4A		complement component 4A (Rodgers blood group)

Fetching correlation data, please wait...
Getting list of correlations for id 2962.
Getting list of p-values for id 2962.
1 of 3 done.
Getting list of correlations for id 2963.
Getting list of p-values for id 2963.
2 of 3 done.
Getting list of correlations for id 2964.
Getting list of p-values for id 2964.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.291 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118455	8179399	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179399	8118409	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118455	8118409	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8118409	8118455	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8118409	8179399	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8179399	8118455	NM_007293	C4A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8118455	8151074	NM_002603	PDE7A	-0.712202	1.618276e-17	8.411960e-13	1.201709e-13
8	8118409	8151074	NM_002603	PDE7A	-0.712202	1.618276e-17	8.411960e-13	1.051495e-13
9	8179399	8151074	NM_002603	PDE7A	-0.712202	1.618276e-17	8.411960e-13	9.346623e-14
10	8118409	7947991	NM_015231	NUP160	-0.706865	3.575137e-17	1.858392e-12	1.858392e-13
11	8179399	7947991	NM_015231	NUP160	-0.706865	3.575137e-17	1.858392e-12	1.689447e-13
12	8118455	7947991	NM_015231	NUP160	-0.706865	3.575137e-17	1.858392e-12	1.548660e-13
13	8179399	8125234	NM_019105	TNXB	0.705791	4.185136e-17	2.175475e-12	1.673443e-13
14	8118455	8125234	NM_019105	TNXB	0.705791	4.185136e-17	2.175475e-12	1.553911e-13
15	8118409	8125234	NM_019105	TNXB	0.705791	4.185136e-17	2.175475e-12	1.450317e-13
16	8118409	8016320	NM_203400	RPRML	0.703334	5.982451e-17	3.109738e-12	1.943586e-13
17	8118455	8016320	NM_203400	RPRML	0.703334	5.982451e-17	3.109738e-12	1.829258e-13
18	8179399	8016320	NM_203400	RPRML	0.703334	5.982451e-17	3.109738e-12	1.727632e-13
19	8118409	7934544	NM_144589	COMTD1	0.700244	9.329998e-17	4.849826e-12	2.552540e-13
20	8118455	7934544	NM_144589	COMTD1	0.700244	9.329998e-17	4.849826e-12	2.424913e-13
21	8179399	7934544	NM_144589	COMTD1	0.700244	9.329998e-17	4.849826e-12	2.309441e-13
22	8118409	8153704	NM_031309	SCRT1	0.696374	1.614853e-16	8.394167e-12	3.815531e-13
23	8118455	8153704	NM_031309	SCRT1	0.696374	1.614853e-16	8.394167e-12	3.649638e-13
24	8179399	8153704	NM_031309	SCRT1	0.696374	1.614853e-16	8.394167e-12	3.497570e-13
25	8179399	7945688	NR_003512	INS-IGF2	0.695930	1.718890e-16	8.934964e-12	3.573986e-13
26	8118455	7945688	NR_003512	INS-IGF2	0.695930	1.718890e-16	8.934964e-12	3.436525e-13
27	8118409	7945688	NR_003512	INS-IGF2	0.695930	1.718890e-16	8.934964e-12	3.309246e-13
28	8118455	8044263	NM_006267	RANBP2	-0.694590	2.073504e-16	1.077828e-11	3.849387e-13
29	8118409	8044263	NM_006267	RANBP2	-0.694590	2.073504e-16	1.077828e-11	3.716649e-13
30	8179399	8044263	NM_006267	RANBP2	-0.694590	2.073504e-16	1.077828e-11	3.592761e-13
31	8179399	8029671	NM_177417	KLC3	0.693070	2.562290e-16	1.331904e-11	4.296464e-13
32	8118455	8029671	NM_177417	KLC3	0.693070	2.562290e-16	1.331904e-11	4.162199e-13
33	8118409	8029671	NM_177417	KLC3	0.693070	2.562290e-16	1.331904e-11	4.036072e-13
34	8179399	8133339	NM_001077621	VPS37D	0.693050	2.569143e-16	1.335466e-11	3.927841e-13
35	8118455	8133339	NM_001077621	VPS37D	0.693050	2.569143e-16	1.335466e-11	3.815617e-13
36	8118409	8133339	NM_001077621	VPS37D	0.693050	2.569143e-16	1.335466e-11	3.709628e-13
37	8179399	7991332	NM_018670	MESP1	0.691233	3.302726e-16	1.716790e-11	4.639973e-13
38	8118409	7991332	NM_018670	MESP1	0.691233	3.302726e-16	1.716790e-11	4.517868e-13
39	8118455	7991332	NM_018670	MESP1	0.691233	3.302726e-16	1.716790e-11	4.402025e-13
40	8179399	8125289	NR_001284	TNXA	0.690063	3.879216e-16	2.016455e-11	5.041138e-13
41	8118409	8125289	NR_001284	TNXA	0.690063	3.879216e-16	2.016455e-11	4.918183e-13
42	8118455	8125289	NR_001284	TNXA	0.690063	3.879216e-16	2.016455e-11	4.801084e-13
43	8179399	8083094	NM_006506	RASA2	-0.689726	4.062161e-16	2.111552e-11	4.910586e-13
44	8118455	8083094	NM_006506	RASA2	-0.689726	4.062161e-16	2.111552e-11	4.798982e-13
45	8118409	8083094	NM_006506	RASA2	-0.689726	4.062161e-16	2.111552e-11	4.692338e-13
46	8118455	8110681	NM_138464	C5orf55	0.689663	4.097277e-16	2.129805e-11	4.630012e-13
47	8179399	8110681	NM_138464	C5orf55	0.689663	4.097277e-16	2.129805e-11	4.531501e-13
48	8118409	8110681	NM_138464	C5orf55	0.689663	4.097277e-16	2.129805e-11	4.437094e-13
49	8179399	8161533	NM_001085476	FOXD4L6	0.688810	4.604200e-16	2.393309e-11	4.884305e-13
50	8118409	8161533	NM_001085476	FOXD4L6	0.688810	4.604200e-16	2.393309e-11	4.786619e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation