[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2239	7900699	NM_001255	CDC20		cell division cycle 20 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 2239.
Getting list of p-values for id 2239.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7900699	7909990	AK290103	LOC100287934	-0.656040	3.051546e-14	5.287413e-10	5.287413e-10
2	7900699	7896754	AK290103	LOC100287934	-0.643181	1.378208e-13	2.388022e-9	1.194011e-9
3	7900699	8003875	NM_001124758	SPNS2	0.639621	2.066081e-13	3.579899e-9	1.193300e-9
4	7900699	7957715	NM_001135175	NEDD1	-0.631156	5.299203e-13	9.181929e-9	2.295482e-9
5	7900699	7946275	NR_003945	GVIN1	-0.626457	8.828938e-13	1.529790e-8	3.059580e-9
6	7900699	8156167	NM_024635	NAA35	-0.620538	1.659271e-12	2.875020e-8	4.791699e-9
7	7900699	8101099	NM_018115	SDAD1	-0.611912	4.065422e-12	7.044157e-8	1.006308e-8
8	7900699	7903676	NM_153340	ATXN7L2	0.610949	4.485425e-12	7.771897e-8	9.714871e-9
9	7900699	8113157	NM_014639	TTC37	-0.609628	5.130926e-12	8.890356e-8	9.878174e-9
10	7900699	8024347	NM_079834	SCAMP4	0.601211	1.190693e-11	2.063115e-7	2.063115e-8
11	7900699	7956894	NM_033647	HELB	-0.600319	1.299900e-11	2.252337e-7	2.047579e-8
12	7900699	8099926	NM_001100399	PDS5A	-0.599882	1.356825e-11	2.350970e-7	1.959142e-8
13	7900699	8133818	NM_001127358	PHTF2	-0.597598	1.696193e-11	2.938994e-7	2.260765e-8
14	7900699	8036813	NM_001005851	ZNF780B	-0.597012	1.795702e-11	3.111413e-7	2.222438e-8
15	7900699	8012220	NM_006942	SOX15	0.596846	1.824795e-11	3.161823e-7	2.107882e-8
16	7900699	8120022	NM_001253	CDC5L	-0.596718	1.847602e-11	3.201339e-7	2.000837e-8
17	7900699	8105545	NM_016338	IPO11	-0.596686	1.853315e-11	3.211239e-7	1.888964e-8
18	7900699	7991138	NM_021077	NMB	0.595952	1.990023e-11	3.448112e-7	1.915618e-8
19	7900699	8045381	NM_058241	CCNT2	-0.594052	2.390391e-11	4.141831e-7	2.179911e-8
20	7900699	7965048	NM_004537	NAP1L1	-0.593562	2.505470e-11	4.341228e-7	2.170614e-8
21	7900699	8044236	NM_181453	GCC2	-0.593451	2.532486e-11	4.388039e-7	2.089542e-8
22	7900699	8157534	NM_007018	CEP110	-0.592455	2.785967e-11	4.827245e-7	2.194202e-8
23	7900699	7929201	NM_003972	BTAF1	-0.591449	3.066750e-11	5.313759e-7	2.310330e-8
24	7900699	7934870	NM_032810	ATAD1	-0.590976	3.208136e-11	5.558738e-7	2.316141e-8
25	7900699	8027352			-0.590588	3.328643e-11	5.767541e-7	2.307016e-8
26	7900699	8068522	NM_003316	TTC3	-0.588992	3.872131e-11	6.709241e-7	2.580477e-8
27	7900699	7916562	NM_002136	HNRNPA1	-0.587680	4.381788e-11	7.592324e-7	2.811972e-8
28	7900699	7947991	NM_015231	NUP160	-0.587345	4.522336e-11	7.835852e-7	2.798519e-8
29	7900699	8105136	NM_003432	ZNF131	-0.586199	5.035340e-11	8.724733e-7	3.008529e-8
30	7900699	8052331	NM_033109	PNPT1	-0.585578	5.336363e-11	9.246316e-7	3.082105e-8
31	7900699	8120102	NM_012120	CD2AP	-0.585413	5.419237e-11	9.389912e-7	3.029004e-8
32	7900699	8044263	NM_006267	RANBP2	-0.585298	5.477686e-11	9.491187e-7	2.965996e-8
33	7900699	8035842	NM_003430	ZNF91	-0.584815	5.729972e-11	9.928323e-7	3.008583e-8
34	7900699	8062695	NM_006275	SRSF6	-0.584685	5.799856e-11	1.004941e-6	2.955709e-8
35	7900699	8131539	NM_018374	TMEM106B	-0.584666	5.810071e-11	1.006711e-6	2.876317e-8
36	7900699	7968761	NM_024561	NAA16	-0.584543	5.877315e-11	1.018362e-6	2.828784e-8
37	7900699	7904997	NM_001143883	PPIAL4B	-0.584112	6.117235e-11	1.059933e-6	2.864685e-8
38	7900699	7905016	NM_001143883	PPIAL4B	-0.584112	6.117235e-11	1.059933e-6	2.789298e-8
39	7900699	8105778	NM_181523	PIK3R1	-0.584021	6.169431e-11	1.068977e-6	2.740967e-8
40	7900699	7974771	NM_022495	C14orf135	-0.583574	6.431108e-11	1.114318e-6	2.785795e-8
41	7900699	8133704	NM_001110199	SRRM3	0.583123	6.705706e-11	1.161898e-6	2.833897e-8
42	7900699	7951497	NM_002519	NPAT	-0.583032	6.762291e-11	1.171702e-6	2.789767e-8
43	7900699	7966343	ENST00000365465		-0.581820	7.563619e-11	1.310548e-6	3.047787e-8
44	7900699	8107164	NM_015216	PPIP5K2	-0.581148	8.046435e-11	1.394206e-6	3.168649e-8
45	7900699	8098758	NM_133474	ZNF721	-0.581061	8.111483e-11	1.405477e-6	3.123281e-8
46	7900699	7941749	NM_177963	SYT12	0.580890	8.239657e-11	1.427685e-6	3.103664e-8
47	7900699	8089203	NM_020654	SENP7	-0.580608	8.456132e-11	1.465194e-6	3.117434e-8
48	7900699	8105353	NM_015360	SKIV2L2	-0.580221	8.761685e-11	1.518137e-6	3.162786e-8
49	7900699	8081537	NM_016388	TRAT1	-0.580022	8.923707e-11	1.546211e-6	3.155532e-8
50	7900699	8030220	NM_003660	PPFIA3	0.579356	9.484673e-11	1.643409e-6	3.286819e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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