[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4474	8010550	NM_024591	CHMP6		chromatin modifying protein 6

Fetching correlation data, please wait...
Getting list of correlations for id 4474.
Getting list of p-values for id 4474.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8010550	8159654	NM_015456	COBRA1	0.485962	1.479141e-7	2.562908e-3	2.562908e-3
2	8010550	8002102	AF090894		-0.468704	4.590704e-7	7.954313e-3	3.977157e-3
3	8010550	7941879	NM_198517	TBC1D10C	0.447344	1.715807e-6	2.972979e-2	9.909929e-3
4	8010550	8019296	NM_016538	SIRT7	0.444670	2.011315e-6	3.485005e-2	8.712512e-3
5	8010550	8012383	NM_032354	TMEM107	0.443174	2.196952e-6	3.806659e-2	7.613319e-3
6	8010550	8074927	NR_024448	LOC91316	0.441526	2.420167e-6	4.193424e-2	6.989040e-3
7	8010550	8033190	NM_024103	SLC25A23	0.440272	2.604160e-6	4.512228e-2	6.446040e-3
8	8010550	8167305	NM_006579	EBP	0.440210	2.613568e-6	4.528530e-2	5.660662e-3
9	8010550	8020321	AF090940		-0.435423	3.448104e-6	5.974529e-2	6.638366e-3
10	8010550	8175900	NM_001666	ARHGAP4	0.434193	3.699946e-6	6.410897e-2	6.410897e-3
11	8010550	7904869	NM_001130111	FAM108A1	0.432593	4.053727e-6	7.023892e-2	6.385356e-3
12	8010550	7904948	NM_001130111	FAM108A1	0.432593	4.053727e-6	7.023892e-2	5.853243e-3
13	8010550	7949172	NM_004579	MAP4K2	0.430111	4.666479e-6	8.085608e-2	6.219699e-3
14	8010550	8134821	NM_019606	MEPCE	0.429967	4.704528e-6	8.151536e-2	5.822526e-3
15	8010550	7945579	NM_001142674	CHID1	0.429404	4.856417e-6	8.414714e-2	5.609809e-3
16	8010550	8028311	NM_021102	SPINT2	0.429217	4.907765e-6	8.503685e-2	5.314803e-3
17	8010550	8165462	NM_013366	ANAPC2	0.429074	4.947378e-6	8.572323e-2	5.042543e-3
18	8010550	8033069	NM_175614	NDUFA11	0.428724	5.045816e-6	8.742885e-2	4.857158e-3
19	8010550	8025895	NM_002743	PRKCSH	0.428048	5.241170e-6	9.081376e-2	4.779671e-3
20	8010550	8055208	NM_032357	CCDC115	0.427027	5.549487e-6	9.615597e-2	4.807798e-3
21	8010550	8074842	NM_001130111	FAM108A1	0.425692	5.978722e-6	1.035933e-1	4.933015e-3
22	8010550	7998222	NM_006428	MRPL28	0.425495	6.044889e-6	1.047398e-1	4.760899e-3
23	8010550	8007008	NM_003250	THRA	0.424557	6.368182e-6	1.103415e-1	4.797456e-3
24	8010550	8038382	NM_017916	PIH1D1	0.423589	6.719229e-6	1.164241e-1	4.851004e-3
25	8010550	8036242	NM_032878	ALKBH6	0.420469	7.978322e-6	1.382404e-1	5.529615e-3
26	8010550	8135856	NM_001662	ARF5	0.418951	8.668312e-6	1.501958e-1	5.776763e-3
27	8010550	7924230	NM_001130111	FAM108A1	0.418875	8.703914e-6	1.508127e-1	5.585656e-3
28	8010550	7949792	NM_005608	PTPRCAP	0.415822	1.027148e-5	1.779740e-1	6.356214e-3
29	8010550	8095159	ENST00000459077		-0.414878	1.080771e-5	1.872652e-1	6.457420e-3
30	8010550	8032009	NM_017550	MIER2	0.414712	1.090472e-5	1.889461e-1	6.298204e-3
31	8010550	8028563	NM_021107	MRPS12	0.413745	1.148557e-5	1.990105e-1	6.419694e-3
32	8010550	7949776	NM_020441	CORO1B	0.412139	1.251568e-5	2.168591e-1	6.776847e-3
33	8010550	7960898	ENST00000341827		-0.411390	1.302534e-5	2.256900e-1	6.839091e-3
34	8010550	8065444	NM_032501	ACSS1	0.411339	1.306077e-5	2.263040e-1	6.656000e-3
35	8010550	8158406	NM_018201	TBC1D13	0.409855	1.413068e-5	2.448423e-1	6.995496e-3
36	8010550	8063449	AK024093		-0.409497	1.440071e-5	2.495211e-1	6.931142e-3
37	8010550	8132849	ENST00000459440		-0.408100	1.550279e-5	2.686168e-1	7.259914e-3
38	8010550	7996571	NM_024519	FAM65A	0.407792	1.575607e-5	2.730053e-1	7.184351e-3
39	8010550	7911422	NM_016547	SDF4	0.407717	1.581818e-5	2.740816e-1	7.027733e-3
40	8010550	8061706	NM_015352	POFUT1	0.405128	1.811502e-5	3.138790e-1	7.846976e-3
41	8010550	8063893	NM_007002	ADRM1	0.404718	1.850703e-5	3.206713e-1	7.821251e-3
42	8010550	7936011	NM_024040	CUEDC2	0.404536	1.868256e-5	3.237127e-1	7.707445e-3
43	8010550	8149208	ENST00000420198		-0.404130	1.908137e-5	3.306229e-1	7.688905e-3
44	8010550	8099362	ENST00000411154		0.403672	1.954087e-5	3.385847e-1	7.695107e-3
45	8010550	8030199	NM_003089	SNRNP70	0.403189	2.003677e-5	3.471772e-1	7.715048e-3
46	8010550	8080198	NM_144641	PPM1M	0.401730	2.160674e-5	3.743799e-1	8.138694e-3
47	8010550	7941927	NM_003977	AIP	0.400811	2.265505e-5	3.925441e-1	8.352002e-3
48	8010550	8158961	NM_001122823	GTF3C5	0.400577	2.292904e-5	3.972914e-1	8.276905e-3
49	8010550	7949808	NM_004910	PITPNM1	0.400429	2.310359e-5	4.003159e-1	8.169711e-3
50	8010550	8001938	NM_003789	TRADD	0.400247	2.332124e-5	4.040871e-1	8.081742e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation