[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1963	8020211	NM_001279	CIDEA		cell death-inducing DFFA-like effector a

Fetching correlation data, please wait...
Getting list of correlations for id 1963.
Getting list of p-values for id 1963.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.151 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8020211	7987701	NM_016642	SPTBN5	0.771952	5.466448e-22	9.471715e-18	9.471715e-18
2	8020211	8029950	NM_014601	EHD2	0.768137	1.155274e-21	2.001743e-17	1.000871e-17
3	8020211	7962625	NM_001098531	RAPGEF3	0.761861	3.836563e-21	6.647612e-17	2.215871e-17
4	8020211	8037513	NM_138568	EXOC3L2	0.753144	1.913951e-20	3.316303e-16	8.290757e-17
5	8020211	8049942	NM_080741	NEU4	0.752227	2.257700e-20	3.911916e-16	7.823833e-17
6	8020211	8004842	NM_173728	ARHGEF15	0.747266	5.450310e-20	9.443752e-16	1.573959e-16
7	8020211	8137330	ENST00000356058		0.745414	7.534505e-20	1.305504e-15	1.865005e-16
8	8020211	8049729	NM_198998	AQP12A	0.744347	9.068943e-20	1.571376e-15	1.964220e-16
9	8020211	8012309	NM_001139	ALOX12B	0.743914	9.774424e-20	1.693614e-15	1.881794e-16
10	8020211	7913450	NM_005529	HSPG2	0.743655	1.022171e-19	1.771115e-15	1.771115e-16
11	8020211	8016168	NM_133373	PLCD3	0.743329	1.081205e-19	1.873404e-15	1.703095e-16
12	8020211	8060134	NM_004321	KIF1A	0.741902	1.381737e-19	2.394136e-15	1.995113e-16
13	8020211	8170648	NM_001711	BGN	0.741046	1.599555e-19	2.771549e-15	2.131961e-16
14	8020211	8008228	NM_138281	DLX4	0.740951	1.625546e-19	2.816584e-15	2.011846e-16
15	8020211	7976669	NM_001127258	HHIPL1	0.740685	1.701027e-19	2.947370e-15	1.964913e-16
16	8020211	8001666	NM_001896	CSNK2A2	-0.739217	2.182232e-19	3.781153e-15	2.363221e-16
17	8020211	7906307	NM_018240	KIRREL	0.739123	2.217294e-19	3.841906e-15	2.259944e-16
18	8020211	8029458	NM_001039213	CEACAM16	0.738991	2.267370e-19	3.928672e-15	2.182595e-16
19	8020211	8042335	NM_003375	VDAC2	-0.738584	2.428680e-19	4.208174e-15	2.214828e-16
20	8020211	8055476	NR_024058	YWHAE	-0.737856	2.745420e-19	4.756989e-15	2.378495e-16
21	8020211	8015323	NM_153490	KRT13	0.737561	2.885204e-19	4.999193e-15	2.380568e-16
22	8020211	7946661	NM_015881	DKK3	0.737546	2.892307e-19	5.011501e-15	2.277955e-16
23	8020211	8107406	ENST00000410774		0.736663	3.353622e-19	5.810822e-15	2.526444e-16
24	8020211	8026735	NM_133644	GTPBP3	0.736364	3.525030e-19	6.107819e-15	2.544925e-16
25	8020211	8088425	NM_138805	FAM3D	0.736243	3.597263e-19	6.232978e-15	2.493191e-16
26	8020211	8028407	NM_000540	RYR1	0.735111	4.342850e-19	7.524856e-15	2.894175e-16
27	8020211	8049670	NM_002081	GPC1	0.733684	5.500271e-19	9.530319e-15	3.529748e-16
28	8020211	7952893	BC024764	IQSEC3	0.733491	5.677888e-19	9.838076e-15	3.513599e-16
29	8020211	8053728	NM_000798	DRD5	0.733431	5.734402e-19	9.935998e-15	3.426206e-16
30	8020211	8113981	NM_004199	P4HA2	0.732273	6.937006e-19	1.201975e-14	4.006583e-16
31	8020211	7914361	NM_001856	COL16A1	0.731586	7.762400e-19	1.344991e-14	4.338681e-16
32	8020211	7934544	NM_144589	COMTD1	0.731440	7.950158e-19	1.377524e-14	4.304762e-16
33	8020211	8153101	NM_152888	COL22A1	0.731284	8.154797e-19	1.412982e-14	4.281763e-16
34	8020211	7949015	NM_001144936	C11orf95	0.730564	9.171053e-19	1.589068e-14	4.673731e-16
35	8020211	8125805	NM_000841	GRM4	0.730031	1.000093e-18	1.732861e-14	4.951031e-16
36	8020211	7996027	NM_002996	CX3CL1	0.729794	1.039210e-18	1.800639e-14	5.001776e-16
37	8020211	8072436	NM_001002837	INPP5J	0.729342	1.118100e-18	1.937331e-14	5.236031e-16
38	8020211	7966189	NM_213596	FOXN4	0.728956	1.190236e-18	2.062321e-14	5.427162e-16
39	8020211	8136401	NM_015135	NUP205	-0.728759	1.228747e-18	2.129049e-14	5.459100e-16
40	8020211	7914433	NM_001703	BAI2	0.727722	1.451957e-18	2.515806e-14	6.289515e-16
41	8020211	7949344	NM_005468	NAALADL1	0.726967	1.638741e-18	2.839446e-14	6.925477e-16
42	8020211	8006896	NM_003673	TCAP	0.726508	1.763844e-18	3.056212e-14	7.276696e-16
43	8020211	8087907	NM_020163	SEMA3G	0.726329	1.814783e-18	3.144474e-14	7.312730e-16
44	8020211	8062796	NM_024034	GDAP1L1	0.725976	1.920002e-18	3.326787e-14	7.560879e-16
45	8020211	7937560	NM_002457	MUC2	0.725642	2.025085e-18	3.508865e-14	7.797477e-16
46	8020211	8163972	NM_001100588	RC3H2	-0.725436	2.092310e-18	3.625345e-14	7.881186e-16
47	8020211	7950042	NM_012309	SHANK2	0.724568	2.401656e-18	4.161349e-14	8.853935e-16
48	8020211	7958577	NM_032829	C12orf34	0.723558	2.817369e-18	4.881655e-14	1.017011e-15
49	8020211	7947744	NM_002334	LRP4	0.723434	2.872870e-18	4.977822e-14	1.015882e-15
50	8020211	8086908	NM_001130082	PLXNB1	0.722907	3.121423e-18	5.408490e-14	1.081698e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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