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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
472 8049478 NM_198189 COPS8 link to infopage COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)

Fetching correlation data, please wait...
Getting list of correlations for id 472.
Getting list of p-values for id 472.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8049478 8140730 NM_024315 C7orf23 link to infopage 0.714885 1.078988e-17 1.869562e-13 1.869562e-13
2 8049478 8130438 NM_016020 TFB1M link to infopage 0.685417 7.290839e-16 1.263284e-11 6.316418e-12
3 8049478 8089584 NM_015412 C3orf17 link to infopage 0.684865 7.852346e-16 1.360576e-11 4.535253e-12
4 8049478 8150818 NM_006756 TCEA1 link to infopage 0.684283 8.489721e-16 1.471014e-11 3.677535e-12
5 8049478 7981919 NM_022807 SNRPN link to infopage 0.683566 9.343483e-16 1.618945e-11 3.237891e-12
6 8049478 7970569 NM_014363 SACS link to infopage 0.680834 1.343260e-15 2.327466e-11 3.879110e-12
7 8049478 8042588 NM_005791 MPHOSPH10 link to infopage 0.680509 1.402038e-15 2.429312e-11 3.470445e-12
8 8049478 8098985 NM_024511 HAUS3 link to infopage 0.676794 2.280986e-15 3.952264e-11 4.940330e-12
9 8049478 8121118 NM_012115 CASP8AP2 link to infopage 0.673291 3.586093e-15 6.213623e-11 6.904025e-12
10 8049478 8123695 NM_206836 PECI link to infopage 0.673216 3.620969e-15 6.274052e-11 6.274052e-12
11 8049478 8078600 NM_006756 TCEA1 link to infopage 0.673037 3.704729e-15 6.419184e-11 5.835622e-12
12 8049478 8069561 NM_152265 BTF3L4 link to infopage 0.670936 4.844618e-15 8.394270e-11 6.995225e-12
13 8049478 8027416 NM_003796 C19orf2 link to infopage 0.668701 6.428635e-15 1.113890e-10 8.568381e-12
14 8049478 8131479 NM_019005 MIOS link to infopage 0.668476 6.612631e-15 1.145771e-10 8.184076e-12
15 8049478 8021418 NM_006785 MALT1 link to infopage 0.668307 6.755353e-15 1.170500e-10 7.803333e-12
16 8049478 8147156 NM_007013 WWP1 link to infopage 0.667459 7.514324e-15 1.302007e-10 8.137543e-12
17 8049478 8055645 NM_002552 ORC4L link to infopage 0.665610 9.468368e-15 1.640584e-10 9.650495e-12
18 8049478 7971563 NM_020357 PCNP link to infopage 0.664680 1.062789e-14 1.841495e-10 1.023053e-11
19 8049478 7943580 NM_003478 CUL5 link to infopage 0.664013 1.154386e-14 2.000204e-10 1.052739e-11
20 8049478 7954503 NM_004264 MED21 link to infopage 0.663846 1.178578e-14 2.042123e-10 1.021061e-11
21 8049478 8121734 NM_014034 ASF1A link to infopage 0.663120 1.289106e-14 2.233634e-10 1.063635e-11
22 8049478 8063283 NM_001316 CSE1L link to infopage 0.662484 1.394177e-14 2.415691e-10 1.098041e-11
23 8049478 8107375 NM_022828 YTHDC2 link to infopage 0.662255 1.433950e-14 2.484605e-10 1.080263e-11
24 8049478 8108403 NM_199189 MATR3 link to infopage 0.662179 1.447425e-14 2.507954e-10 1.044981e-11
25 8049478 8109697 NM_004060 CCNG1 link to infopage 0.658435 2.285921e-14 3.960815e-10 1.584326e-11
26 8049478 8152465 NM_003756 EIF3H link to infopage 0.657978 2.415930e-14 4.186082e-10 1.610032e-11
27 8049478 8161829 BC034033 C9orf41 link to infopage 0.657525 2.551836e-14 4.421567e-10 1.637617e-11
28 8049478 8111814 NM_000997 RPL37 link to infopage 0.657297 2.623129e-14 4.545095e-10 1.623248e-11
29 8049478 8112892 CR608596 LOC644037 link to infopage 0.657237 2.642058e-14 4.577893e-10 1.578584e-11
30 8049478 7901418 NM_152265 BTF3L4 link to infopage 0.656870 2.761734e-14 4.785257e-10 1.595086e-11
31 8049478 8169984 NM_000194 HPRT1 link to infopage 0.655728 3.168034e-14 5.489253e-10 1.770727e-11
32 8049478 8022170 NM_001024662 RPL6 link to infopage 0.655646 3.199400e-14 5.543600e-10 1.732375e-11
33 8049478 8092328 NM_020166 MCCC1 link to infopage 0.655636 3.203175e-14 5.550141e-10 1.681861e-11
34 8049478 8161988 NM_013438 UBQLN1 link to infopage 0.655190 3.379161e-14 5.855073e-10 1.722080e-11
35 8049478 8039947 NM_006625 SRSF10 link to infopage 0.654794 3.543007e-14 6.138968e-10 1.753991e-11
36 8049478 7966534 NM_001024662 RPL6 link to infopage 0.654735 3.568098e-14 6.182443e-10 1.717345e-11
37 8049478 8084694 NM_001967 EIF4A2 link to infopage 0.653588 4.091137e-14 7.088712e-10 1.915868e-11
38 8049478 8129706 NM_006620 HBS1L link to infopage 0.652529 4.639399e-14 8.038687e-10 2.115444e-11
39 8049478 8104350 NM_015325 KIAA0947 link to infopage 0.651807 5.053031e-14 8.755386e-10 2.244971e-11
40 8049478 8027650 NM_005499 UBA2 link to infopage 0.651725 5.102330e-14 8.840807e-10 2.210202e-11
41 8049478 8135235 NM_004279 PMPCB link to infopage 0.650955 5.587595e-14 9.681626e-10 2.361372e-11
42 8049478 7916570 NM_145243 OMA1 link to infopage 0.649490 6.637021e-14 1.149997e-9 2.738087e-11
43 8049478 7980891 NM_001128596 TC2N link to infopage 0.649343 6.752448e-14 1.169997e-9 2.720923e-11
44 8049478 7980923 NM_004239 TRIP11 link to infopage 0.649326 6.765624e-14 1.172280e-9 2.664272e-11
45 8049478 8028227 NM_152604 ZNF383 link to infopage 0.648868 7.138582e-14 1.236902e-9 2.748671e-11
46 8049478 7954279 NM_153207 AEBP2 link to infopage 0.648591 7.373533e-14 1.277612e-9 2.777417e-11
47 8049478 8101340 NR_003249 HNRPDL link to infopage 0.648473 7.475849e-14 1.295340e-9 2.756043e-11
48 8049478 8111629 NM_153485 NUP155 link to infopage 0.647677 8.201975e-14 1.421156e-9 2.960742e-11
49 8049478 8134180 NM_019004 ANKIB1 link to infopage 0.647313 8.557416e-14 1.482744e-9 3.026007e-11
50 8049478 8036813 NM_001005851 ZNF780B link to infopage 0.646795 9.087722e-14 1.574630e-9 3.149259e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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