[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6747	7954752	NM_012062	DNM1L		dynamin 1-like

Fetching correlation data, please wait...
Getting list of correlations for id 6747.
Getting list of p-values for id 6747.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7954752	8063283	NM_001316	CSE1L	0.857447	1.733126e-31	3.002988e-27	3.002988e-27
2	7954752	8088219	NM_001112736	C3orf63	0.855958	2.844444e-31	4.928569e-27	2.464284e-27
3	7954752	7935320	NM_020123	TM9SF3	0.851105	1.377168e-30	2.386219e-26	7.954064e-27
4	7954752	8091562	NM_020865	DHX36	0.850196	1.838592e-30	3.185729e-26	7.964322e-27
5	7954752	7974146	NM_017922	PRPF39	0.848618	3.024113e-30	5.239881e-26	1.047976e-26
6	7954752	8116664	NM_003913	PRPF4B	0.847417	4.400203e-30	7.624232e-26	1.270705e-26
7	7954752	8097600	NM_003601	SMARCA5	0.845894	7.045083e-30	1.220701e-25	1.743859e-26
8	7954752	8097647	NM_002940	ABCE1	0.844404	1.110992e-29	1.925015e-25	2.406269e-26
9	7954752	7932678	NM_139312	YME1L1	0.843754	1.353480e-29	2.345174e-25	2.605749e-26
10	7954752	7916969	NM_005455	ZRANB2	0.842301	2.096707e-29	3.632964e-25	3.632964e-26
11	7954752	8070341	NM_033656	BRWD1	0.841961	2.321652e-29	4.022727e-25	3.657024e-26
12	7954752	8069711	NM_015565	RNF160	0.840447	3.643037e-29	6.312290e-25	5.260242e-26
13	7954752	8105353	NM_015360	SKIV2L2	0.839446	4.894292e-29	8.480340e-25	6.523338e-26
14	7954752	8051882	NM_133259	LRPPRC	0.838105	7.244811e-29	1.255308e-24	8.966489e-26
15	7954752	8127787	NM_015525	IBTK	0.837678	8.201901e-29	1.421143e-24	9.474289e-26
16	7954752	7988713	NM_017672	TRPM7	0.837254	9.275475e-29	1.607161e-24	1.004476e-25
17	7954752	8039947	NM_006625	SRSF10	0.837122	9.636622e-29	1.669737e-24	9.821985e-26
18	7954752	8127943	NM_153816	SNX14	0.835283	1.635121e-28	2.833174e-24	1.573986e-25
19	7954752	7969935	NM_000123	ERCC5	0.833609	2.631124e-28	4.558948e-24	2.399447e-25
20	7954752	8173713	NM_032121	MAGT1	0.833200	2.953722e-28	5.117913e-24	2.558957e-25
21	7954752	8144812	NM_006197	PCM1	0.832536	3.559476e-28	6.167504e-24	2.936907e-25
22	7954752	7924351	NM_004446	EPRS	0.830996	5.471350e-28	9.480208e-24	4.309186e-25
23	7954752	8097480	NM_057175	NAA15	0.830455	6.356624e-28	1.101412e-23	4.788749e-25
24	7954752	8078270	NM_002948	RPL15	0.830169	6.881452e-28	1.192349e-23	4.968121e-25
25	7954752	7913712	NM_006625	SRSF10	0.829903	7.405733e-28	1.283191e-23	5.132765e-25
26	7954752	8052845	NM_022173	TIA1	0.828866	9.847630e-28	1.706299e-23	6.562688e-25
27	7954752	7903281	NM_012243	SLC35A3	0.827974	1.256294e-27	2.176780e-23	8.062148e-25
28	7954752	8045697	NM_018151	RIF1	0.827434	1.455147e-27	2.521334e-23	9.004764e-25
29	7954752	8089234	NM_014415	ZBTB11	0.826687	1.781238e-27	3.086350e-23	1.064259e-24
30	7954752	8092564	NM_004593	TRA2B	0.826609	1.819099e-27	3.151953e-23	1.050651e-24
31	7954752	7978449	NM_015382	HECTD1	0.825669	2.343192e-27	4.060048e-23	1.309693e-24
32	7954752	7930614	NM_198514	NHLRC2	0.824577	3.137889e-27	5.437021e-23	1.699069e-24
33	7954752	8084986	NM_032288	FYTTD1	0.824248	3.425432e-27	5.935247e-23	1.798560e-24
34	7954752	7912292	NM_032368	LZIC	0.823668	3.994734e-27	6.921675e-23	2.035787e-24
35	7954752	8113157	NM_014639	TTC37	0.823250	4.462227e-27	7.731700e-23	2.209057e-24
36	7954752	7995583	NM_025134	CHD9	0.823227	4.489721e-27	7.779339e-23	2.160928e-24
37	7954752	7986769	NM_130839	UBE3A	0.822302	5.729241e-27	9.927055e-23	2.682988e-24
38	7954752	8039933	NM_017761	PNRC2	0.821383	7.289266e-27	1.263011e-22	3.323713e-24
39	7954752	7898910	NM_017761	PNRC2	0.821383	7.289266e-27	1.263011e-22	3.238490e-24
40	7954752	7908421	NM_004600	TROVE2	0.821100	7.847783e-27	1.359785e-22	3.399463e-24
41	7954752	8095773	NM_003715	USO1	0.821029	7.994607e-27	1.385226e-22	3.378599e-24
42	7954752	7901895	NM_032852	ATG4C	0.820892	8.283638e-27	1.435306e-22	3.417395e-24
43	7954752	7912852	NM_001412	EIF1AX	0.820243	9.806550e-27	1.699181e-22	3.951583e-24
44	7954752	8106303	NM_016218	POLK	0.820005	1.043043e-26	1.807280e-22	4.107455e-24
45	7954752	8084128	NM_133462	TTC14	0.819984	1.048877e-26	1.817389e-22	4.038642e-24
46	7954752	8085815	NM_001068	TOP2B	0.819816	1.095375e-26	1.897957e-22	4.125993e-24
47	7954752	7953878	NM_001004419	CLEC2D	0.819180	1.290722e-26	2.236434e-22	4.758371e-24
48	7954752	8091190	NM_001184	ATR	0.818689	1.464510e-26	2.537557e-22	5.286577e-24
49	7954752	7989387	NM_020821	VPS13C	0.818065	1.718631e-26	2.977872e-22	6.077289e-24
50	7954752	8083183	NM_001080415	SR140	0.817863	1.810113e-26	3.136382e-22	6.272764e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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