[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7059	8061211	NM_080820	DTD1		D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 7059.
Getting list of p-values for id 7059.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8061211	7909603	NM_013349	NENF	0.425832	5.932379e-6	1.027903e-1	1.027903e-1
2	8061211	7981512	ENST00000360268		0.422754	7.036321e-6	1.219183e-1	6.095917e-2
3	8061211	8070953	NM_001142854	C21orf56	0.419167	8.566673e-6	1.484348e-1	4.947825e-2
4	8061211	7958950	BC022092	C12orf52	0.416207	1.006016e-5	1.743123e-1	4.357808e-2
5	8061211	8153536	NM_001136033	PUF60	0.413618	1.156400e-5	2.003694e-1	4.007388e-2
6	8061211	8071951	ENST00000330974		0.413107	1.188466e-5	2.059255e-1	3.432092e-2
7	8061211	8033554	NM_016579	CD320	0.412966	1.197466e-5	2.074849e-1	2.964070e-2
8	8061211	7992043	BC001181	FAM173A	0.410295	1.380541e-5	2.392063e-1	2.990079e-2
9	8061211	7898856			0.405870	1.742715e-5	3.019602e-1	3.355114e-2
10	8061211	7966738	AK298857	C12orf49	0.403934	1.927668e-5	3.340071e-1	3.340071e-2
11	8061211	8058516			0.402901	2.033837e-5	3.524030e-1	3.203663e-2
12	8061211	7907058	NM_002697	POU2F1	-0.402768	2.047852e-5	3.548313e-1	2.956927e-2
13	8061211	7931379	NM_002412	MGMT	0.401834	2.149136e-5	3.723808e-1	2.864468e-2
14	8061211	8018814	ENST00000410876		-0.400932	2.251420e-5	3.901035e-1	2.786453e-2
15	8061211	7998762	NM_001919	DCI	0.397936	2.624735e-5	4.547878e-1	3.031919e-2
16	8061211	8032484	NM_012458	TIMM13	0.396241	2.860943e-5	4.957156e-1	3.098223e-2
17	8061211	8107855	NR_023344	RNU6ATAC	0.396091	2.882710e-5	4.994871e-1	2.938160e-2
18	8061211	8024246	NM_017914	C19orf24	0.392305	3.488297e-5	6.044173e-1	3.357874e-2
19	8061211	8155073	NM_174923	CCDC107	0.388540	4.206718e-5	7.288981e-1	3.836306e-2
20	8061211	7949373	NM_014205	ZNHIT2	0.387988	4.323112e-5	7.490657e-1	3.745328e-2
21	8061211	8040477	ENST00000363959		0.386486	4.654989e-5	8.065699e-1	3.840809e-2
22	8061211	8027032	NM_001100418	C19orf60	0.385967	4.775057e-5	8.273741e-1	3.760791e-2
23	8061211	8024273	NM_024407	NDUFS7	0.385765	4.822552e-5	8.356036e-1	3.633059e-2
24	8061211	8131135	NM_018641	CHST12	0.382603	5.626500e-5	9.749036e-1	4.062098e-2
25	8061211	7942912	ENST00000364007		-0.381383	5.968726e-5	1.034201e+0	4.136805e-2
26	8061211	7910387	NM_021205	RHOU	0.380054	6.363766e-5	1.102650e+0	4.240961e-2
27	8061211	8158214	NM_016035	COQ4	0.379725	6.465177e-5	1.120221e+0	4.148968e-2
28	8061211	7974249	NM_001663	ARF6	0.377625	7.149204e-5	1.238743e+0	4.424081e-2
29	8061211	8021563	AY358662		-0.376945	7.384780e-5	1.279561e+0	4.412278e-2
30	8061211	8093852	NM_002448	MSX1	0.375523	7.900839e-5	1.368978e+0	4.563262e-2
31	8061211	7998449	NM_001001410	C16orf42	0.373757	8.588843e-5	1.488189e+0	4.800609e-2
32	8061211	8028311	NM_021102	SPINT2	0.373741	8.595153e-5	1.489282e+0	4.654007e-2
33	8061211	8110872	NM_033267	IRX2	0.372921	8.933380e-5	1.547887e+0	4.690566e-2
34	8061211	7941685	NM_005125	CCS	0.372323	9.187806e-5	1.591971e+0	4.682268e-2
35	8061211	7949836	NM_005851	CDK2AP2	0.371805	9.413945e-5	1.631154e+0	4.660441e-2
36	8061211	8076563	NM_173467	MCAT	0.371598	9.505568e-5	1.647030e+0	4.575083e-2
37	8061211	7960381	CR627161	EFCAB4B	-0.371431	9.580269e-5	1.659973e+0	4.486414e-2
38	8061211	8032863	NM_019107	C19orf10	0.370801	9.866494e-5	1.709567e+0	4.498862e-2
39	8061211	7996448	NM_003946	NOL3	0.368424	1.101953e-4	1.909353e+0	4.895777e-2
40	8061211	8113344	NC_001807		-0.367944	1.126711e-4	1.952253e+0	4.880632e-2
41	8061211	8103483	NC_001807		-0.367944	1.126711e-4	1.952253e+0	4.761592e-2
42	8061211	8114207	NC_001807		-0.367944	1.126711e-4	1.952253e+0	4.648221e-2
43	8061211	8067183	ENST00000384429		0.366425	1.208486e-4	2.093944e+0	4.869636e-2
44	8061211	8141166	AK125166	LOC441268	0.366092	1.227120e-4	2.126230e+0	4.832342e-2
45	8061211	8039791	NM_032792	ZBTB45	0.364741	1.305599e-4	2.262211e+0	5.027135e-2
46	8061211	8093943	AK026375	LOC93622	0.364668	1.309950e-4	2.269751e+0	4.934242e-2
47	8061211	7949792	NM_005608	PTPRCAP	0.364355	1.328852e-4	2.302503e+0	4.898942e-2
48	8061211	8155596	BC110369	LOC203274	0.363580	1.376729e-4	2.385458e+0	4.969704e-2
49	8061211	7913380	NM_032264	NBPF3	-0.363281	1.395585e-4	2.418130e+0	4.934960e-2
50	8061211	8132209	NR_003502	LOC441208	0.362764	1.428798e-4	2.475679e+0	4.951358e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation