[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3189	8082003	NM_018456	EAF2		ELL associated factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 3189.
Getting list of p-values for id 3189.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8082003	8020149	NM_003826	NAPG	0.630656	5.597528e-13	9.698837e-9	9.698837e-9
2	8082003	8155234	NM_032226	ZCCHC7	0.624578	1.080336e-12	1.871898e-8	9.359491e-9
3	8082003	8134631	NM_138494	ZNF655	0.611483	4.247450e-12	7.359557e-8	2.453186e-8
4	8082003	7974483	NM_182926	KTN1	0.609839	5.021767e-12	8.701216e-8	2.175304e-8
5	8082003	7903032	NM_007358	MTF2	0.607362	6.451620e-12	1.117872e-7	2.235744e-8
6	8082003	8095074	NM_133267	GSX2	-0.606381	7.120075e-12	1.233695e-7	2.056159e-8
7	8082003	7914764	NM_007167	ZMYM6	0.600920	1.225272e-11	2.123029e-7	3.032899e-8
8	8082003	8145636	NM_024567	HMBOX1	0.598775	1.512203e-11	2.620195e-7	3.275243e-8
9	8082003	7961654	NM_002907	RECQL	0.594255	2.344214e-11	4.061819e-7	4.513132e-8
10	8082003	7946635	NM_021211	ZBED5	0.593651	2.484177e-11	4.304333e-7	4.304333e-8
11	8082003	8099649	NM_001358	DHX15	0.593532	2.512688e-11	4.353735e-7	3.957941e-8
12	8082003	8039947	NM_006625	SRSF10	0.593150	2.606512e-11	4.516303e-7	3.763586e-8
13	8082003	8051589	NM_022374	ATL2	0.591808	2.963478e-11	5.134818e-7	3.949860e-8
14	8082003	8057719	NM_014362	HIBCH	0.591658	3.006342e-11	5.209089e-7	3.720778e-8
15	8082003	7951144	NM_024725	CCDC82	0.591129	3.161810e-11	5.478469e-7	3.652312e-8
16	8082003	8116664	NM_003913	PRPF4B	0.590309	3.417927e-11	5.922242e-7	3.701401e-8
17	8082003	8129706	NM_006620	HBS1L	0.589350	3.743247e-11	6.485924e-7	3.815249e-8
18	8082003	7973770	NM_016106	SCFD1	0.587619	4.407188e-11	7.636335e-7	4.242408e-8
19	8082003	8109462	NM_004779	CNOT8	0.587456	4.475340e-11	7.754422e-7	4.081275e-8
20	8082003	7922309	NM_003762	VAMP4	0.587012	4.665903e-11	8.084610e-7	4.042305e-8
21	8082003	8078110	NM_014296	CAPN7	0.586641	4.830980e-11	8.370640e-7	3.986019e-8
22	8082003	8169419	BC117377	ALG13	0.585030	5.616281e-11	9.731329e-7	4.423332e-8
23	8082003	7974066	NM_002687	PNN	0.584942	5.662778e-11	9.811895e-7	4.266041e-8
24	8082003	8076077	NM_006386	DDX17	0.584443	5.931773e-11	1.027798e-6	4.282493e-8
25	8082003	8050719	NM_006277	ITSN2	0.583622	6.402122e-11	1.109296e-6	4.437182e-8
26	8082003	8131479	NM_019005	MIOS	0.583233	6.637396e-11	1.150062e-6	4.423314e-8
27	8082003	8068062	NM_006447	USP16	0.582420	7.156222e-11	1.239959e-6	4.592439e-8
28	8082003	8103508	NM_017923	MARCH1	0.582360	7.196007e-11	1.246852e-6	4.453043e-8
29	8082003	7980923	NM_004239	TRIP11	0.579418	9.430455e-11	1.634015e-6	5.634534e-8
30	8082003	7950796	NM_001039618	CREBZF	0.578144	1.059361e-10	1.835555e-6	6.118516e-8
31	8082003	8045697	NM_018151	RIF1	0.577016	1.173815e-10	2.033870e-6	6.560871e-8
32	8082003	7974303	NM_030755	TMX1	0.576497	1.230325e-10	2.131783e-6	6.661823e-8
33	8082003	8046169	NM_004792	PPIG	0.574488	1.475057e-10	2.555831e-6	7.744943e-8
34	8082003	7957633	NM_006838	METAP2	0.574089	1.528817e-10	2.648981e-6	7.791121e-8
35	8082003	8008201	NM_002507	NGFR	-0.573984	1.543321e-10	2.674112e-6	7.640321e-8
36	8082003	8013906	NM_002822	TWF1	0.573824	1.565677e-10	2.712849e-6	7.535692e-8
37	8082003	8081867	NM_016589	C3orf1	0.573824	1.565723e-10	2.712929e-6	7.332239e-8
38	8082003	7964246	NR_003046	SNORD59B	0.573335	1.635824e-10	2.834393e-6	7.458929e-8
39	8082003	7913712	NM_006625	SRSF10	0.573277	1.644420e-10	2.849286e-6	7.305862e-8
40	8082003	8147848	NM_181354	OXR1	0.573225	1.652092e-10	2.862579e-6	7.156448e-8
41	8082003	8154316	NM_152896	UHRF2	0.572903	1.700471e-10	2.946407e-6	7.186358e-8
42	8082003	8006638	NM_024835	GGNBP2	0.572832	1.711298e-10	2.965166e-6	7.059918e-8
43	8082003	7901915	NM_013339	ALG6	0.571862	1.866222e-10	3.233604e-6	7.520008e-8
44	8082003	8097480	NM_057175	NAA15	0.571508	1.925994e-10	3.337169e-6	7.584476e-8
45	8082003	7942626	NM_003369	UVRAG	0.571443	1.937075e-10	3.356369e-6	7.458598e-8
46	8082003	7971967	NM_014953	DIS3	0.570382	2.128675e-10	3.688355e-6	8.018164e-8
47	8082003	8138553	NM_032581	FAM126A	0.569803	2.240876e-10	3.882767e-6	8.261206e-8
48	8082003	7958158	NM_013320	HCFC2	0.569761	2.249125e-10	3.897059e-6	8.118873e-8
49	8082003	8017634	NM_004396	DDX5	0.568848	2.438287e-10	4.224820e-6	8.622083e-8
50	8082003	8023165	NM_032124	HDHD2	0.568677	2.475507e-10	4.289311e-6	8.578623e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation