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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
15241 8170998 NM_012151 F8A1 link to infopage coagulation factor VIII-associated (intronic transcript) 1
15250 8176245 NM_012151 F8A1 link to infopage coagulation factor VIII-associated (intronic transcript) 1
15265 8171029 NM_012151 F8A1 link to infopage coagulation factor VIII-associated (intronic transcript) 1

Fetching correlation data, please wait...
Getting list of correlations for id 15241.
Getting list of p-values for id 15241.
1 of 3 done.
Getting list of correlations for id 15250.
Getting list of p-values for id 15250.
2 of 3 done.
Getting list of correlations for id 15265.
Getting list of p-values for id 15265.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.177 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8171029 8170998 NM_012151 F8A1 link to infopage 0.993316 2.058405e-98 1.069980e-93 1.069980e-93
2 8170998 8171029 NM_012151 F8A1 link to infopage 0.993316 2.058405e-98 1.069980e-93 5.349898e-94
3 8176245 8170998 NM_012151 F8A1 link to infopage 0.972737 3.419691e-67 1.777590e-62 5.925299e-63
4 8170998 8176245 NM_012151 F8A1 link to infopage 0.972737 3.419691e-67 1.777590e-62 4.443974e-63
5 8176245 8171029 NM_012151 F8A1 link to infopage 0.971854 1.729703e-66 8.991170e-62 1.798234e-62
6 8171029 8176245 NM_012151 F8A1 link to infopage 0.971854 1.729703e-66 8.991170e-62 1.498528e-62
7 8171029 8087833 NM_001947 DUSP7 link to infopage 0.614211 3.210298e-12 1.668745e-7 2.383921e-8
8 8176245 8019263 NM_004309 ARHGDIA link to infopage 0.609833 5.025305e-12 2.612204e-7 3.265255e-8
9 8170998 8087833 NM_001947 DUSP7 link to infopage 0.609531 5.181323e-12 2.693303e-7 2.992559e-8
10 8171029 8049689 NM_018226 RNPEPL1 link to infopage 0.601193 1.192719e-11 6.199871e-7 6.199871e-8
11 8170998 8049689 NM_018226 RNPEPL1 link to infopage 0.600933 1.223694e-11 6.360883e-7 5.782621e-8
12 8171029 8038078 NM_006801 KDELR1 link to infopage 0.595750 2.029296e-11 1.054849e-6 8.790405e-8
13 8170998 8019263 NM_004309 ARHGDIA link to infopage 0.587583 4.422050e-11 2.298626e-6 1.768174e-7
14 8170998 8038078 NM_006801 KDELR1 link to infopage 0.584324 5.998081e-11 3.117862e-6 2.227045e-7
15 8176245 8087833 NM_001947 DUSP7 link to infopage 0.584035 6.161285e-11 3.202698e-6 2.135132e-7
16 8171029 8019263 NM_004309 ARHGDIA link to infopage 0.583748 6.327817e-11 3.289262e-6 2.055789e-7
17 8171029 8026564 NM_016270 KLF2 link to infopage 0.577810 1.092062e-10 5.676649e-6 3.339206e-7
18 8171029 8027778 NM_144779 FXYD5 link to infopage 0.576279 1.254836e-10 6.522765e-6 3.623758e-7
19 8176245 7992905 NM_001083601 NAT15 link to infopage 0.576099 1.275456e-10 6.629950e-6 3.489447e-7
20 8176245 8049689 NM_018226 RNPEPL1 link to infopage 0.574605 1.459482e-10 7.586533e-6 3.793267e-7
21 8171029 8048304 NM_021198 CTDSP1 link to infopage 0.573469 1.616387e-10 8.402141e-6 4.001020e-7
22 8171029 8012000 NM_001004333 RNASEK link to infopage 0.572421 1.775253e-10 9.227944e-6 4.194520e-7
23 8170998 7992905 NM_001083601 NAT15 link to infopage 0.572040 1.836725e-10 9.547480e-6 4.151078e-7
24 8171029 7992905 NM_001083601 NAT15 link to infopage 0.571884 1.862469e-10 9.681299e-6 4.033875e-7
25 8176245 8038078 NM_006801 KDELR1 link to infopage 0.570050 2.192380e-10 1.139621e-5 4.558484e-7
26 8171029 8173444 NM_000206 IL2RG link to infopage 0.569580 2.285507e-10 1.188029e-5 4.569343e-7
27 8170998 8048304 NM_021198 CTDSP1 link to infopage 0.567234 2.810598e-10 1.460977e-5 5.411025e-7
28 8176245 8133690 NM_005918 MDH2 link to infopage 0.567202 2.818454e-10 1.465061e-5 5.232359e-7
29 8170998 8026564 NM_016270 KLF2 link to infopage 0.567195 2.820225e-10 1.465981e-5 5.055107e-7
30 8170998 8133690 NM_005918 MDH2 link to infopage 0.566245 3.065209e-10 1.593326e-5 5.311087e-7
31 8171029 8133690 NM_005918 MDH2 link to infopage 0.565644 3.230596e-10 1.679296e-5 5.417085e-7
32 8176245 8048304 NM_021198 CTDSP1 link to infopage 0.564220 3.657237e-10 1.901068e-5 5.940839e-7
33 8170998 8027778 NM_144779 FXYD5 link to infopage 0.563342 3.946917e-10 2.051647e-5 6.217112e-7
34 8170998 8124798 NM_133471 KIAA1949 link to infopage 0.563292 3.964179e-10 2.060620e-5 6.060647e-7
35 8171029 8124798 NM_133471 KIAA1949 link to infopage 0.563000 4.065755e-10 2.113420e-5 6.038344e-7
36 8170998 8133192 NM_017994 C7orf42 link to infopage 0.562144 4.377840e-10 2.275645e-5 6.321236e-7
37 8171029 8175844 NM_174869 IDH3G link to infopage 0.561886 4.476591e-10 2.326977e-5 6.289126e-7
38 8171029 8137225 NM_013400 REPIN1 link to infopage 0.560542 5.025409e-10 2.612258e-5 6.874363e-7
39 8176245 7984871 NM_004383 CSK link to infopage 0.560138 5.202740e-10 2.704436e-5 6.934452e-7
40 8176245 8026564 NM_016270 KLF2 link to infopage 0.560095 5.221976e-10 2.714435e-5 6.786088e-7
41 8171029 8133192 NM_017994 C7orf42 link to infopage 0.559849 5.333289e-10 2.772297e-5 6.761699e-7
42 8170998 7984871 NM_004383 CSK link to infopage 0.559743 5.382033e-10 2.797635e-5 6.661035e-7
43 8170998 8062981 NM_015937 PIGT link to infopage 0.558468 6.001691e-10 3.119739e-5 7.255207e-7
44 8170998 8173444 NM_000206 IL2RG link to infopage 0.558311 6.082592e-10 3.161792e-5 7.185892e-7
45 8170998 8005994 NM_005702 ERAL1 link to infopage 0.558153 6.164702e-10 3.204474e-5 7.121053e-7
46 8171029 8005994 NM_005702 ERAL1 link to infopage 0.557457 6.540999e-10 3.400077e-5 7.391471e-7
47 8171029 8062981 NM_015937 PIGT link to infopage 0.555487 7.729258e-10 4.017745e-5 8.548394e-7
48 8170998 8012197 NM_020360 PLSCR3 link to infopage 0.552230 1.016110e-9 5.281840e-5 1.100383e-6
49 8171029 8033207 NM_024898 DENND1C link to infopage 0.552074 1.029423e-9 5.351044e-5 1.092050e-6
50 8176245 7992205 NM_194259 UBE2I link to infopage 0.551511 1.078963e-9 5.608560e-5 1.121712e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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