[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2896	7901229	NM_001441	FAAH		fatty acid amide hydrolase

Fetching correlation data, please wait...
Getting list of correlations for id 2896.
Getting list of p-values for id 2896.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901229	7971246	NM_015058	KIAA0564	-0.668481	6.608853e-15	1.145116e-10	1.145116e-10
2	7901229	8094093	NM_080819	GPR78	0.641038	1.759807e-13	3.049218e-9	1.524609e-9
3	7901229	8020630	NM_153211	TTC39C	-0.639242	2.156535e-13	3.736628e-9	1.245543e-9
4	7901229	7899813	NM_005610	RBBP4	-0.637616	2.589362e-13	4.486587e-9	1.121647e-9
5	7901229	8142912	NM_032842	TMEM209	-0.636391	2.969732e-13	5.145654e-9	1.029131e-9
6	7901229	8092035	NM_024947	PHC3	-0.635000	3.467335e-13	6.007852e-9	1.001309e-9
7	7901229	7969881	NM_003291	TPP2	-0.628677	6.944477e-13	1.203270e-8	1.718957e-9
8	7901229	7917359	NM_017953	ZNHIT6	-0.626999	8.327769e-13	1.442953e-8	1.803691e-9
9	7901229	8129193	NM_001042475	C6orf204	-0.623265	1.242883e-12	2.153543e-8	2.392825e-9
10	7901229	7946610	NM_001418	EIF4G2	-0.622556	1.340232e-12	2.322221e-8	2.322221e-9
11	7901229	8103979	NM_020827	KIAA1430	-0.621799	1.452206e-12	2.516237e-8	2.287488e-9
12	7901229	7972487	NM_015296	DOCK9	-0.621676	1.471267e-12	2.549264e-8	2.124387e-9
13	7901229	8035315	NM_138454	NXNL1	0.617407	2.304574e-12	3.993135e-8	3.071643e-9
14	7901229	7919251	NM_016334	GPR89B	-0.616705	2.479341e-12	4.295955e-8	3.068539e-9
15	7901229	8027439	NM_001136156	ZNF507	-0.615534	2.799974e-12	4.851515e-8	3.234343e-9
16	7901229	8041179	NM_024692	CLIP4	-0.615344	2.855508e-12	4.947738e-8	3.092336e-9
17	7901229	8163795	NM_005047	PSMD5	-0.614195	3.215684e-12	5.571815e-8	3.277538e-9
18	7901229	7992379	NM_001010865	EME2	0.614159	3.227404e-12	5.592122e-8	3.106735e-9
19	7901229	8051928	NM_006036	PREPL	-0.613796	3.350477e-12	5.805372e-8	3.055459e-9
20	7901229	8151281	NM_014294	TRAM1	-0.613740	3.369750e-12	5.838765e-8	2.919383e-9
21	7901229	8136516	NM_173569	UBN2	-0.612090	3.991907e-12	6.916777e-8	3.293703e-9
22	7901229	8122409	NM_003630	PEX3	-0.611960	4.045494e-12	7.009627e-8	3.186194e-9
23	7901229	8061303	NM_002196	INSM1	0.611885	4.076567e-12	7.063468e-8	3.071073e-9
24	7901229	8059319	NM_005687	FARSB	-0.611829	4.099880e-12	7.103862e-8	2.959942e-9
25	7901229	7956908	ENST00000458887		-0.610042	4.919420e-12	8.523880e-8	3.409552e-9
26	7901229	7974653	NM_014749	KIAA0586	-0.610039	4.920805e-12	8.526279e-8	3.279338e-9
27	7901229	8089701	NM_015642	ZBTB20	-0.609828	5.027536e-12	8.711212e-8	3.226375e-9
28	7901229	8160332	NM_004529	MLLT3	-0.609498	5.198681e-12	9.007755e-8	3.217055e-9
29	7901229	8045425	NM_015361	R3HDM1	-0.608906	5.520125e-12	9.564721e-8	3.298180e-9
30	7901229	8172713	XM_293416	LOC347549	0.608534	5.732113e-12	9.932032e-8	3.310677e-9
31	7901229	8094948	NM_020846	SLAIN2	-0.608498	5.752745e-12	9.967781e-8	3.215413e-9
32	7901229	8054135	NM_012214	MGAT4A	-0.608126	5.973517e-12	1.035031e-7	3.234473e-9
33	7901229	8020267	NM_032142	CEP192	-0.607997	6.051678e-12	1.048574e-7	3.177498e-9
34	7901229	7989128	NM_144571	CNOT6L	-0.607694	6.239306e-12	1.081085e-7	3.179660e-9
35	7901229	8173613	NM_016120	RLIM	-0.606311	7.170486e-12	1.242430e-7	3.549801e-9
36	7901229	7904930	NM_016334	GPR89B	-0.606284	7.190059e-12	1.245821e-7	3.460615e-9
37	7901229	8030158	NR_027882	BAX	0.605478	7.794010e-12	1.350468e-7	3.649914e-9
38	7901229	8136401	NM_015135	NUP205	-0.605326	7.913799e-12	1.371224e-7	3.608484e-9
39	7901229	8040985	NM_032434	ZNF512	-0.604546	8.554631e-12	1.482261e-7	3.800669e-9
40	7901229	7995479	NM_001040284	PAPD5	-0.603856	9.162940e-12	1.587663e-7	3.969157e-9
41	7901229	8051882	NM_133259	LRPPRC	-0.603359	9.627551e-12	1.668166e-7	4.068697e-9
42	7901229	8096781	NM_006323	SEC24B	-0.603340	9.645616e-12	1.671296e-7	3.979276e-9
43	7901229	8131539	NM_018374	TMEM106B	-0.603264	9.718453e-12	1.683916e-7	3.916085e-9
44	7901229	8092095	NM_015028	TNIK	-0.603158	9.821381e-12	1.701751e-7	3.867615e-9
45	7901229	8100251	NM_015030	FRYL	-0.603045	9.931959e-12	1.720910e-7	3.824246e-9
46	7901229	8081564	NM_198196	CD96	-0.602444	1.054135e-11	1.826500e-7	3.970653e-9
47	7901229	7999562	NM_002582	PARN	-0.601886	1.113884e-11	1.930027e-7	4.106441e-9
48	7901229	8147483	NM_178812	MTDH	-0.601219	1.189747e-11	2.061474e-7	4.294738e-9
49	7901229	7925792	NM_006624	ZMYND11	-0.601044	1.210433e-11	2.097317e-7	4.280238e-9
50	7901229	8078600	NM_006756	TCEA1	-0.600983	1.217745e-11	2.109987e-7	4.219974e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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