[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5625	7959039	NM_153348	FBXW8		F-box and WD repeat domain containing 8

Fetching correlation data, please wait...
Getting list of correlations for id 5625.
Getting list of p-values for id 5625.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.102 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959039	7923662	NM_002646	PIK3C2B	0.538518	3.114679e-9	5.396804e-5	5.396804e-5
2	7959039	7923917	NM_005449	FAIM3	0.516976	1.640932e-8	2.843243e-4	1.421621e-4
3	7959039	8053496	NM_015425	POLR1A	0.495908	7.482581e-8	1.296507e-3	4.321689e-4
4	7959039	8010188	NM_001142640	TNRC6C	0.495262	7.826461e-8	1.356091e-3	3.390227e-4
5	7959039	7972946	NM_007368	RASA3	0.493506	8.838433e-8	1.531435e-3	3.062871e-4
6	7959039	8146159	NM_001134296	AP3M2	0.489799	1.140137e-7	1.975515e-3	3.292525e-4
7	7959039	8023646	NM_000633	BCL2	0.489224	1.185704e-7	2.054469e-3	2.934955e-4
8	7959039	7929634	NM_198046	ZDHHC16	0.485700	1.505584e-7	2.608725e-3	3.260906e-4
9	7959039	7963750	NM_012117	CBX5	0.484917	1.587049e-7	2.749879e-3	3.055421e-4
10	7959039	8002802	NM_030581	WDR59	0.477803	2.546301e-7	4.411976e-3	4.411976e-4
11	7959039	8057056	NM_133378	TTN	0.472881	3.509985e-7	6.081752e-3	5.528865e-4
12	7959039	7938118	NM_173589	DNHD1	0.471251	3.899115e-7	6.755996e-3	5.629997e-4
13	7959039	8026272	NM_004843	IL27RA	0.470181	4.176765e-7	7.237081e-3	5.566985e-4
14	7959039	8061725	NM_015338	ASXL1	0.467456	4.970707e-7	8.612743e-3	6.151960e-4
15	7959039	8133167	NM_153033	KCTD7	0.465792	5.524048e-7	9.571519e-3	6.381012e-4
16	7959039	8128138	NM_014611	MDN1	0.462027	6.999468e-7	1.212798e-2	7.579986e-4
17	7959039	8075430	NM_014941	MORC2	0.461594	7.191383e-7	1.246051e-2	7.329712e-4
18	7959039	8072494	NM_001007467	SFI1	0.455862	1.025154e-6	1.776284e-2	9.868243e-4
19	7959039	7900857	NM_174963	ST3GAL3	0.453883	1.156856e-6	2.004484e-2	1.054992e-3
20	7959039	8133610	NM_001013739	STAG3L3	0.451884	1.306213e-6	2.263276e-2	1.131638e-3
21	7959039	8068902	NM_015056	RRP1B	0.450459	1.423566e-6	2.466612e-2	1.174577e-3
22	7959039	7930226	NM_014976	PDCD11	0.448987	1.555254e-6	2.694789e-2	1.224904e-3
23	7959039	8069943	NM_014825	URB1	0.448897	1.563690e-6	2.709406e-2	1.178003e-3
24	7959039	8044669	NM_013412	RABL2A	0.447875	1.662306e-6	2.880278e-2	1.200116e-3
25	7959039	8060675	NM_021873	CDC25B	0.447743	1.675489e-6	2.903119e-2	1.161248e-3
26	7959039	8140196	NM_001025202	STAG3L2	0.447002	1.751238e-6	3.034371e-2	1.167066e-3
27	7959039	8062623	NM_002660	PLCG1	0.446283	1.827824e-6	3.167071e-2	1.172989e-3
28	7959039	7980044	NM_006029	PNMA1	0.445313	1.936071e-6	3.354630e-2	1.198082e-3
29	7959039	7924636	NM_014698	TMEM63A	0.444914	1.982483e-6	3.435049e-2	1.184499e-3
30	7959039	8139977	NM_001013739	STAG3L3	0.443860	2.109862e-6	3.655758e-2	1.218586e-3
31	7959039	7952601	NM_001143820	ETS1	0.443154	2.199474e-6	3.811029e-2	1.229364e-3
32	7959039	7966938	NM_006836	GCN1L1	0.442696	2.259546e-6	3.915116e-2	1.223474e-3
33	7959039	7905754	NM_020452	ATP8B2	0.438494	2.887893e-6	5.003852e-2	1.516319e-3
34	7959039	8049097	NM_152383	DIS3L2	0.438473	2.891396e-6	5.009922e-2	1.473507e-3
35	7959039	8144625	NM_001715	BLK	0.438278	2.924350e-6	5.067020e-2	1.447720e-3
36	7959039	7910752	NM_000254	MTR	0.437985	2.974326e-6	5.153615e-2	1.431560e-3
37	7959039	8085431	NM_024923	NUP210	0.437555	3.049363e-6	5.283632e-2	1.428009e-3
38	7959039	8010161	NM_006640	SEPT9	0.436890	3.168711e-6	5.490426e-2	1.444849e-3
39	7959039	7909890	NM_021958	HLX	-0.435525	3.427977e-6	5.939655e-2	1.522989e-3
40	7959039	8156610	NM_014282	HABP4	0.435234	3.485607e-6	6.039512e-2	1.509878e-3
41	7959039	7972888	BC008975	PCID2	0.432994	3.962257e-6	6.865403e-2	1.674489e-3
42	7959039	8119858	NM_006502	POLH	0.432687	4.032152e-6	6.986510e-2	1.663455e-3
43	7959039	8136709	NR_003715	LOC93432	-0.432010	4.190474e-6	7.260834e-2	1.688566e-3
44	7959039	7993478	NM_004996	ABCC1	0.431863	4.225475e-6	7.321480e-2	1.663973e-3
45	7959039	8024282	NM_170711	DAZAP1	0.431766	4.248947e-6	7.362150e-2	1.636033e-3
46	7959039	8040753	NM_017727	TMEM214	0.431285	4.366478e-6	7.565797e-2	1.644738e-3
47	7959039	8005235	NM_201274	MPRIP	0.431086	4.415985e-6	7.651577e-2	1.627995e-3
48	7959039	7993946	NM_013302	EEF2K	0.430380	4.595987e-6	7.963466e-2	1.659055e-3
49	7959039	8041995	NM_003128	SPTBN1	0.429793	4.751019e-6	8.232090e-2	1.680018e-3
50	7959039	8036613	NM_001533	HNRNPL	0.429766	4.758199e-6	8.244532e-2	1.648906e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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