[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4575	8006940	NM_001030002	GRB7		growth factor receptor-bound protein 7

Fetching correlation data, please wait...
Getting list of correlations for id 4575.
Getting list of p-values for id 4575.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8006940	7917156	NM_003902	FUBP1	-0.778801	1.374928e-22	2.382337e-18	2.382337e-18
2	8006940	8156415	NM_006648	WNK2	0.778014	1.615251e-22	2.798745e-18	1.399372e-18
3	8006940	8096556	NM_015143	METAP1	-0.777977	1.627428e-22	2.819845e-18	9.399484e-19
4	8006940	7974771	NM_022495	C14orf135	-0.777921	1.646164e-22	2.852309e-18	7.130772e-19
5	8006940	8100902	NM_032217	ANKRD17	-0.776423	2.232851e-22	3.868861e-18	7.737722e-19
6	8006940	7977033	NM_030943	AMN	0.774106	3.560486e-22	6.169254e-18	1.028209e-18
7	8006940	7979876	ENST00000413777		0.772375	5.027011e-22	8.710302e-18	1.244329e-18
8	8006940	7935983	NM_005029	PITX3	0.771491	5.989399e-22	1.037783e-17	1.297229e-18
9	8006940	7903239	NM_000028	AGL	-0.771123	6.439975e-22	1.115854e-17	1.239838e-18
10	8006940	8153876	NM_025251	ARHGAP39	0.770115	7.851921e-22	1.360502e-17	1.360502e-18
11	8006940	8008201	NM_002507	NGFR	0.769689	8.535604e-22	1.478964e-17	1.344513e-18
12	8006940	8079021	NM_001904	CTNNB1	-0.766731	1.516525e-21	2.627683e-17	2.189735e-18
13	8006940	8095773	NM_003715	USO1	-0.765245	2.017795e-21	3.496233e-17	2.689410e-18
14	8006940	7977674	NM_007192	SUPT16H	-0.763757	2.680109e-21	4.643825e-17	3.317018e-18
15	8006940	8098512	NM_021942	C4orf41	-0.761917	3.796450e-21	6.578108e-17	4.385405e-18
16	8006940	7911750	NM_001010926	HES5	0.761000	4.510145e-21	7.814728e-17	4.884205e-18
17	8006940	8142971	NM_138693	KLF14	0.760890	4.604141e-21	7.977596e-17	4.692703e-18
18	8006940	8046590	NM_194247	HNRNPA3	-0.760482	4.969512e-21	8.610673e-17	4.783707e-18
19	8006940	8138670	NM_031243	HNRNPA2B1	-0.760127	5.310474e-21	9.201458e-17	4.842873e-18
20	8006940	8133704	NM_001110199	SRRM3	0.759944	5.495660e-21	9.522330e-17	4.761165e-18
21	8006940	8001149	NM_018206	VPS35	-0.759603	5.856231e-21	1.014709e-16	4.831948e-18
22	8006940	7977432	NM_025268	TMEM121	0.759428	6.049648e-21	1.048222e-16	4.764647e-18
23	8006940	7992460	NM_001099456	NPW	0.758110	7.724788e-21	1.338474e-16	5.819452e-18
24	8006940	7987325	NM_014691	AQR	-0.758089	7.755789e-21	1.343845e-16	5.599356e-18
25	8006940	8064676	NM_145762	GFRA4	0.756797	9.839631e-21	1.704913e-16	6.819651e-18
26	8006940	7896779	NM_198317	KLHL17	0.756574	1.025185e-20	1.776338e-16	6.832071e-18
27	8006940	8039362	NM_178837	C19orf51	0.756563	1.027310e-20	1.780020e-16	6.592667e-18
28	8006940	7991939	NM_145294	WDR90	0.756434	1.051813e-20	1.822476e-16	6.508845e-18
29	8006940	8017776	NM_014877	HELZ	-0.755521	1.243165e-20	2.154032e-16	7.427697e-18
30	8006940	8014269	NM_139285	GAS2L2	0.754638	1.460077e-20	2.529876e-16	8.432921e-18
31	8006940	8151609	NM_172239	REXO1L1	0.754193	1.583061e-20	2.742969e-16	8.848287e-18
32	8006940	7897416	NM_001080397	SLC45A1	0.753287	1.865365e-20	3.232118e-16	1.010037e-17
33	8006940	7945688	NR_003512	INS-IGF2	0.753255	1.875987e-20	3.250522e-16	9.850066e-18
34	8006940	8109403	NR_024152	MFAP3	-0.753108	1.926391e-20	3.337858e-16	9.817229e-18
35	8006940	8005328	NM_016239	MYO15A	0.752592	2.114216e-20	3.663302e-16	1.046658e-17
36	8006940	8051670	NM_005633	SOS1	-0.752528	2.138612e-20	3.705574e-16	1.029326e-17
37	8006940	7991893	BC016613	C16orf11	0.752522	2.141120e-20	3.709919e-16	1.002681e-17
38	8006940	7936614	NM_003750	EIF3A	-0.752379	2.197093e-20	3.806903e-16	1.001816e-17
39	8006940	7922823	NM_025191	EDEM3	-0.751824	2.427360e-20	4.205887e-16	1.078433e-17
40	8006940	7946661	NM_015881	DKK3	0.751734	2.466890e-20	4.274380e-16	1.068595e-17
41	8006940	8137330	ENST00000356058		0.751678	2.491500e-20	4.317022e-16	1.052932e-17
42	8006940	7958130	NM_003299	HSP90B1	-0.751251	2.689845e-20	4.660695e-16	1.109689e-17
43	8006940	7896798	NM_032129	PLEKHN1	0.751207	2.710925e-20	4.697220e-16	1.092377e-17
44	8006940	7955112	NM_181788	H1FNT	0.751067	2.779798e-20	4.816557e-16	1.094672e-17
45	8006940	8054766	NM_001097	ACR	0.751030	2.798297e-20	4.848610e-16	1.077469e-17
46	8006940	7947928	NM_031909	C1QTNF4	0.750932	2.847432e-20	4.933745e-16	1.072553e-17
47	8006940	7959234	NM_000545	HNF1A	0.750858	2.885386e-20	4.999509e-16	1.063725e-17
48	8006940	8100714	NM_001031732	YTHDC1	-0.749806	3.480237e-20	6.030206e-16	1.256293e-17
49	8006940	7983663	NM_005154	USP8	-0.749762	3.507129e-20	6.076803e-16	1.240164e-17
50	8006940	8114550	NM_004883	NRG2	0.749053	3.977579e-20	6.891951e-16	1.378390e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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