[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1787	8006968	NM_178171	GSDMA		gasdermin A

Fetching correlation data, please wait...
Getting list of correlations for id 1787.
Getting list of p-values for id 1787.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8006968	7949857	NM_181843	NUDT8	0.660467	1.785185e-14	3.093189e-10	3.093189e-10
2	8006968	7942123	NM_053056	CCND1	0.659951	1.901309e-14	3.294398e-10	1.647199e-10
3	8006968	8076865	NM_001001694	IL17REL	0.658434	2.286092e-14	3.961112e-10	1.320371e-10
4	8006968	8155942	NM_001013735	FOXB2	0.652090	4.886439e-14	8.466732e-10	2.116683e-10
5	8006968	7936882	NM_001146340	NKX1-2	0.651616	5.168191e-14	8.954925e-10	1.790985e-10
6	8006968	8035517	NM_000095	COMP	0.645588	1.045052e-13	1.810761e-9	3.017935e-10
7	8006968	8155083	NM_001216	CA9	0.642953	1.414745e-13	2.451328e-9	3.501897e-10
8	8006968	8087568	NM_032355	MON1A	0.640016	1.975969e-13	3.423762e-9	4.279702e-10
9	8006968	8000467	NM_001109763	GSG1L	0.638517	2.339949e-13	4.054429e-9	4.504921e-10
10	8006968	8032197	NM_152769	C19orf26	0.638137	2.442360e-13	4.231877e-9	4.231877e-10
11	8006968	8021963	NM_001071	TYMS	0.637881	2.513521e-13	4.355178e-9	3.959253e-10
12	8006968	8054872	NM_014553	TFCP2L1	0.636162	3.046849e-13	5.279275e-9	4.399396e-10
13	8006968	7913450	NM_005529	HSPG2	0.635106	3.426811e-13	5.937635e-9	4.567412e-10
14	8006968	7955184	NM_006262	PRPH	0.634939	3.490973e-13	6.048809e-9	4.320578e-10
15	8006968	7991296	NM_198525	KIF7	0.633854	3.937104e-13	6.821820e-9	4.547880e-10
16	8006968	8119435	NM_004828	NCR2	0.633080	4.288822e-13	7.431241e-9	4.644526e-10
17	8006968	8115691	NM_003062	SLIT3	0.632671	4.486849e-13	7.774363e-9	4.573155e-10
18	8006968	8029446	NM_001127893	CEACAM19	0.632616	4.513856e-13	7.821158e-9	4.345088e-10
19	8006968	8012309	NM_001139	ALOX12B	0.632077	4.789663e-13	8.299050e-9	4.367921e-10
20	8006968	8030067	NM_004605	SULT2B1	0.632069	4.794080e-13	8.306703e-9	4.153352e-10
21	8006968	7935983	NM_005029	PITX3	0.631243	5.248776e-13	9.094554e-9	4.330740e-10
22	8006968	7969372	ENST00000362412		0.627820	7.620621e-13	1.320425e-8	6.001931e-10
23	8006968	8065334	NM_002509	NKX2-2	0.627178	8.168363e-13	1.415332e-8	6.153618e-10
24	8006968	8052024	NM_025133	FBXO11	-0.626962	8.361496e-13	1.448796e-8	6.036652e-10
25	8006968	8153346	NM_023946	LYNX1	0.626929	8.391277e-13	1.453957e-8	5.815826e-10
26	8006968	8154132	NR_026663	C9orf70	0.624787	1.056442e-12	1.830497e-8	7.040372e-10
27	8006968	8104253	NM_033120	NKD2	0.623642	1.193926e-12	2.068716e-8	7.661910e-10
28	8006968	7985001	NM_024608	NEIL1	0.623186	1.253276e-12	2.171552e-8	7.755544e-10
29	8006968	8133704	NM_001110199	SRRM3	0.621044	1.573031e-12	2.725591e-8	9.398590e-10
30	8006968	8086391	NM_000729	CCK	0.620736	1.625045e-12	2.815715e-8	9.385717e-10
31	8006968	8082289	NM_152889	CHST13	0.620637	1.642181e-12	2.845407e-8	9.178731e-10
32	8006968	7911435	NM_001014980	FAM132A	0.619022	1.946210e-12	3.372199e-8	1.053812e-9
33	8006968	8156058	ENST00000338392		0.617142	2.369117e-12	4.104969e-8	1.243930e-9
34	8006968	8093440	NM_001004356	FGFRL1	0.616958	2.414763e-12	4.184060e-8	1.230606e-9
35	8006968	7950032	NM_002007	FGF4	0.616792	2.456965e-12	4.257183e-8	1.216338e-9
36	8006968	8067495	NM_031215	CABLES2	0.616338	2.575876e-12	4.463220e-8	1.239783e-9
37	8006968	8066498	NM_003833	MATN4	0.616302	2.585406e-12	4.479733e-8	1.210739e-9
38	8006968	7896865	NM_153254	TTLL10	0.615301	2.868218e-12	4.969761e-8	1.307832e-9
39	8006968	8104305	ENST00000364156		0.615165	2.908884e-12	5.040223e-8	1.292365e-9
40	8006968	8016168	NM_133373	PLCD3	0.615065	2.939344e-12	5.093002e-8	1.273251e-9
41	8006968	8087611	NM_007312	HYAL1	0.614943	2.976439e-12	5.157275e-8	1.257872e-9
42	8006968	7996651	NM_001012984	C16orf86	0.614941	2.977209e-12	5.158610e-8	1.228240e-9
43	8006968	8112072	NM_021147	CCNO	0.614719	3.046342e-12	5.278397e-8	1.227534e-9
44	8006968	7964388	NM_020142	NDUFA4L2	0.614663	3.063883e-12	5.308790e-8	1.206543e-9
45	8006968	7913776	NM_170743	IL28RA	0.614044	3.265935e-12	5.658885e-8	1.257530e-9
46	8006968	7976681	NM_006668	CYP46A1	0.613833	3.337838e-12	5.783472e-8	1.257277e-9
47	8006968	8008228	NM_138281	DLX4	0.613749	3.366960e-12	5.833932e-8	1.241262e-9
48	8006968	7991323	NM_003847	PEX11A	0.613502	3.453488e-12	5.983859e-8	1.246637e-9
49	8006968	8048205	NM_000597	IGFBP2	0.613338	3.512231e-12	6.085643e-8	1.241968e-9
50	8006968	8140028	NM_178125	TRIM50	0.612780	3.719403e-12	6.444609e-8	1.288922e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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