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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
11989 8125470 NM_002120 HLA-DOB link to infopage major histocompatibility complex, class II, DO beta
12186 8178833 NM_002120 HLA-DOB link to infopage major histocompatibility complex, class II, DO beta

Fetching correlation data, please wait...
Getting list of correlations for id 11989.
Getting list of p-values for id 11989.
1 of 2 done.
Getting list of correlations for id 12186.
Getting list of p-values for id 12186.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.161 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178833 8125470 NM_002120 HLA-DOB link to infopage 0.997345 5.117169e-119 1.773304e-114 1.773304e-114
2 8125470 8178833 NM_002120 HLA-DOB link to infopage 0.997345 5.117169e-119 1.773304e-114 8.866519e-115
3 8178833 7981183 NM_021966 TCL1A link to infopage 0.674859 2.931165e-15 1.015766e-10 3.385887e-11
4 8125470 7981183 NM_021966 TCL1A link to infopage 0.673880 3.324970e-15 1.152235e-10 2.880588e-11
5 8178833 7921319 NM_052938 FCRL1 link to infopage 0.670270 5.271995e-15 1.826957e-10 3.653914e-11
6 8125470 7921319 NM_052938 FCRL1 link to infopage 0.662704 1.357017e-14 4.702605e-10 7.837675e-11
7 8178833 8027837 NM_001771 CD22 link to infopage 0.651923 4.984190e-14 1.727221e-9 2.467459e-10
8 8178833 8029136 NM_001783 CD79A link to infopage 0.651459 5.265060e-14 1.824554e-9 2.280692e-10
9 8125470 8027837 NM_001771 CD22 link to infopage 0.648481 7.468361e-14 2.588086e-9 2.875651e-10
10 8125470 8029136 NM_001783 CD79A link to infopage 0.644066 1.245256e-13 4.315309e-9 4.315309e-10
11 8178833 8026787 NM_173544 FAM129C link to infopage 0.619034 1.943713e-12 6.735742e-8 6.123402e-9
12 8125470 8026787 NM_173544 FAM129C link to infopage 0.615534 2.799772e-12 9.702331e-8 8.085276e-9
13 8178833 7921298 NM_030764 FCRL2 link to infopage 0.614411 3.144684e-12 1.089759e-7 8.382761e-9
14 8178833 8161211 NM_016734 PAX5 link to infopage 0.609818 5.032951e-12 1.744119e-7 1.245799e-8
15 8125470 7921298 NM_030764 FCRL2 link to infopage 0.608774 5.594380e-12 1.938676e-7 1.292451e-8
16 8125470 7935270 NM_013314 BLNK link to infopage 0.608082 6.000135e-12 2.079287e-7 1.299554e-8
17 8125470 8161211 NM_016734 PAX5 link to infopage 0.607955 6.077513e-12 2.106101e-7 1.238883e-8
18 8178833 7935270 NM_013314 BLNK link to infopage 0.607715 6.226197e-12 2.157626e-7 1.198681e-8
19 8178833 8081657 NM_001004196 CD200 link to infopage 0.601913 1.110987e-11 3.850014e-7 2.026323e-8
20 8125470 8081657 NM_001004196 CD200 link to infopage 0.599697 1.381689e-11 4.788106e-7 2.394053e-8
21 8125470 8052399 NM_022893 BCL11A link to infopage 0.596923 1.811246e-11 6.276691e-7 2.988900e-8
22 8178833 8150276 NM_001102559 PPAPDC1B link to infopage 0.595906 1.998885e-11 6.926937e-7 3.148608e-8
23 8178833 8052399 NM_022893 BCL11A link to infopage 0.594144 2.369246e-11 8.210386e-7 3.569733e-8
24 8178833 7940287 NM_152866 MS4A1 link to infopage 0.591856 2.950022e-11 1.022301e-6 4.259586e-8
25 8178833 7906786 NM_032738 FCRLA link to infopage 0.591076 3.177619e-11 1.101172e-6 4.404688e-8
26 8125470 7906786 NM_032738 FCRLA link to infopage 0.590780 3.268457e-11 1.132651e-6 4.356350e-8
27 8125470 8150276 NM_001102559 PPAPDC1B link to infopage 0.590648 3.309791e-11 1.146975e-6 4.248056e-8
28 8178833 8131600 NM_014399 TSPAN13 link to infopage 0.589046 3.852504e-11 1.335047e-6 4.768025e-8
29 8125470 8131600 NM_014399 TSPAN13 link to infopage 0.588797 3.943957e-11 1.366739e-6 4.712892e-8
30 8178833 8054254 NM_002285 AFF3 link to infopage 0.583024 6.767463e-11 2.345197e-6 7.817322e-8
31 8125470 8054254 NM_002285 AFF3 link to infopage 0.582900 6.845494e-11 2.372237e-6 7.652379e-8
32 8125470 7940287 NM_152866 MS4A1 link to infopage 0.582211 7.295744e-11 2.528267e-6 7.900835e-8
33 8125470 8112428 NM_005582 CD180 link to infopage 0.576075 1.278266e-10 4.429702e-6 1.342334e-7
34 8178833 8112428 NM_005582 CD180 link to infopage 0.574851 1.427512e-10 4.946900e-6 1.454971e-7
35 8178833 8089519 NM_181780 BTLA link to infopage 0.574521 1.470630e-10 5.096320e-6 1.456092e-7
36 8125470 8089519 NM_181780 BTLA link to infopage 0.560826 4.904473e-10 1.699596e-5 4.721101e-7
37 8178833 8096617 NM_017935 BANK1 link to infopage 0.560010 5.260019e-10 1.822807e-5 4.926505e-7
38 8125470 8096617 NM_017935 BANK1 link to infopage 0.550908 1.134469e-9 3.931387e-5 1.034576e-6
39 8178833 7994576 NR_002939 RUNDC2C link to infopage 0.550357 1.187659e-9 4.115715e-5 1.055312e-6
40 8178833 7944335 NM_001716 CXCR5 link to infopage 0.550099 1.213405e-9 4.204935e-5 1.051234e-6
41 8125470 7994576 NR_002939 RUNDC2C link to infopage 0.548373 1.399655e-9 4.850363e-5 1.183015e-6
42 8125470 7944335 NM_001716 CXCR5 link to infopage 0.544314 1.951898e-9 6.764107e-5 1.610502e-6
43 8178833 8125545 NM_002119 HLA-DOA link to infopage 0.543651 2.059955e-9 7.138569e-5 1.660132e-6
44 8125470 8125545 NM_002119 HLA-DOA link to infopage 0.542809 2.205504e-9 7.642952e-5 1.737035e-6
45 8125470 8172280 NM_032591 SLC9A7 link to infopage 0.538930 3.013822e-9 1.044410e-4 2.320911e-6
46 8178833 8085984 NM_017784 OSBPL10 link to infopage 0.538501 3.118826e-9 1.080798e-4 2.349561e-6
47 8178833 7993825 NM_001012391 RUNDC2B link to infopage 0.538466 3.127617e-9 1.083845e-4 2.306052e-6
48 8125470 8085984 NM_017784 OSBPL10 link to infopage 0.535732 3.887038e-9 1.347014e-4 2.806280e-6
49 8125470 7993825 NM_001012391 RUNDC2B link to infopage 0.533845 4.511175e-9 1.563303e-4 3.190413e-6
50 8178833 8172280 NM_032591 SLC9A7 link to infopage 0.532495 5.015330e-9 1.738012e-4 3.476025e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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