[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2557	7901087	NM_032756	HPDL		4-hydroxyphenylpyruvate dioxygenase-like

Fetching correlation data, please wait...
Getting list of correlations for id 2557.
Getting list of p-values for id 2557.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901087	7899071	ENST00000384508		0.735396	4.142215e-19	7.177216e-15	7.177216e-15
2	7901087	8072941	NM_003614	GALR3	0.734569	4.751930e-19	8.233669e-15	4.116835e-15
3	7901087	7969372	ENST00000362412		0.729549	1.081361e-18	1.873674e-14	6.245579e-15
4	7901087	7912529			0.725464	2.083012e-18	3.609235e-14	9.023087e-15
5	7901087	7995310	ENST00000319817		0.725088	2.211581e-18	3.832006e-14	7.664012e-15
6	7901087	7966690	NM_016569	TBX3	0.719402	5.394903e-18	9.347748e-14	1.557958e-14
7	7901087	7919564	ENST00000365297		0.715764	9.438553e-18	1.635418e-13	2.336311e-14
8	7901087	8013259	ENST00000300983		0.713493	1.332276e-17	2.308435e-13	2.885543e-14
9	7901087	8110382	NM_030567	PRR7	0.712964	1.442876e-17	2.500071e-13	2.777857e-14
10	7901087	8059748	NM_004826	ECEL1	0.703010	6.269824e-17	1.086372e-12	1.086372e-13
11	7901087	7997533	NM_013370	OSGIN1	0.700730	8.703094e-17	1.507985e-12	1.370896e-13
12	7901087	8153359	NM_003695	LY6D	0.700515	8.975940e-17	1.555261e-12	1.296051e-13
13	7901087	8046276	NM_001003845	SP5	0.698582	1.182189e-16	2.048379e-12	1.575676e-13
14	7901087	8058458	ENST00000327138		0.698153	1.256332e-16	2.176847e-12	1.554891e-13
15	7901087	8104305	ENST00000364156		0.697736	1.332635e-16	2.309057e-12	1.539372e-13
16	7901087	8121209	NM_005604	POU3F2	0.697190	1.439630e-16	2.494448e-12	1.559030e-13
17	7901087	7936882	NM_001146340	NKX1-2	0.696317	1.627968e-16	2.820781e-12	1.659283e-13
18	7901087	8138721	NM_153631	HOXA3	0.695630	1.792895e-16	3.106550e-12	1.725861e-13
19	7901087	8030015	NM_012451	SYNGR4	0.692624	2.725487e-16	4.722451e-12	2.485500e-13
20	7901087	7976669	NM_001127258	HHIPL1	0.692079	2.939122e-16	5.092616e-12	2.546308e-13
21	7901087	8049670	NM_002081	GPC1	0.691596	3.141782e-16	5.443766e-12	2.592270e-13
22	7901087	8019693	NM_148896	NPB	0.690698	3.555187e-16	6.160072e-12	2.800033e-13
23	7901087	8010696	NM_148896	NPB	0.690698	3.555187e-16	6.160072e-12	2.678292e-13
24	7901087	8063057	NM_033421	SNX21	0.690666	3.570744e-16	6.187028e-12	2.577928e-13
25	7901087	8137330	ENST00000356058		0.690575	3.615836e-16	6.265159e-12	2.506064e-13
26	7901087	8170648	NM_001711	BGN	0.689731	4.059701e-16	7.034244e-12	2.705478e-13
27	7901087	8028600	NM_001001414	NCCRP1	0.688728	4.655702e-16	8.066935e-12	2.987754e-13
28	7901087	8061799	NM_174897	BPIL3	0.687010	5.879787e-16	1.018791e-11	3.638538e-13
29	7901087	8164562	NM_199350	C9orf50	0.686144	6.610206e-16	1.145350e-11	3.949484e-13
30	7901087	7949843	NM_016366	CABP2	0.684680	8.049480e-16	1.394733e-11	4.649112e-13
31	7901087	8013112	NM_016084	RASD1	0.684421	8.334045e-16	1.444040e-11	4.658193e-13
32	7901087	8038109	NM_017708	FAM83E	0.684042	8.767578e-16	1.519158e-11	4.747369e-13
33	7901087	8143941	NM_198285	WDR86	0.683469	9.465562e-16	1.640098e-11	4.969994e-13
34	7901087	7992758	NM_172229	KREMEN2	0.683250	9.745869e-16	1.688667e-11	4.966667e-13
35	7901087	7996027	NM_002996	CX3CL1	0.683245	9.753087e-16	1.689917e-11	4.828335e-13
36	7901087	7985620	NM_020778	ALPK3	0.683171	9.849766e-16	1.706669e-11	4.740747e-13
37	7901087	8131379	ENST00000384488		0.683147	9.880936e-16	1.712070e-11	4.627215e-13
38	7901087	8004842	NM_173728	ARHGEF15	0.683068	9.985954e-16	1.730266e-11	4.553332e-13
39	7901087	8086540	NM_020208	SLC6A20	0.682466	1.081971e-15	1.874730e-11	4.807001e-13
40	7901087	8107646	NM_001136239	PRDM6	0.682129	1.131516e-15	1.960578e-11	4.901445e-13
41	7901087	8039504	NM_001145176	SHISA7	0.682063	1.141498e-15	1.977873e-11	4.824081e-13
42	7901087	8069142	NM_198687	KRTAP10-4	0.682046	1.144046e-15	1.982289e-11	4.719736e-13
43	7901087	7936590	NM_004248	PRLHR	0.681763	1.187732e-15	2.057983e-11	4.786007e-13
44	7901087	8137228	NM_173680	ZNF775	0.680835	1.342957e-15	2.326941e-11	5.288503e-13
45	7901087	8024306	NM_005883	APC2	0.680497	1.404379e-15	2.433367e-11	5.407482e-13
46	7901087	7991939	NM_145294	WDR90	0.680274	1.446167e-15	2.505774e-11	5.447334e-13
47	7901087	8031084	NM_031895	CACNG8	0.679393	1.623957e-15	2.813830e-11	5.986872e-13
48	7901087	8148821	NM_001008271	SCXA	0.679365	1.630134e-15	2.824532e-11	5.884442e-13
49	7901087	8148796	NM_001008271	SCXA	0.679365	1.630134e-15	2.824532e-11	5.764352e-13
50	7901087	8021199	NM_002747	MAPK4	0.678577	1.807417e-15	3.131712e-11	6.263425e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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