[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2387	8106516	NM_152405	JMY		junction mediating and regulatory protein, p53 cofactor

Fetching correlation data, please wait...
Getting list of correlations for id 2387.
Getting list of p-values for id 2387.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8106516	7987981	NM_174916	UBR1	0.801329	1.012377e-24	1.754146e-20	1.754146e-20
2	8106516	8129193	NM_001042475	C6orf204	0.800920	1.112968e-24	1.928440e-20	9.642200e-21
3	8106516	8091190	NM_001184	ATR	0.797907	2.220982e-24	3.848296e-20	1.282765e-20
4	8106516	8130038	NM_001042683	SHPRH	0.796163	3.295895e-24	5.710796e-20	1.427699e-20
5	8106516	8027439	NM_001136156	ZNF507	0.796085	3.354529e-24	5.812393e-20	1.162479e-20
6	8106516	8106025	NM_018429	BDP1	0.795176	4.113912e-24	7.128176e-20	1.188029e-20
7	8106516	8177560	NM_018429	BDP1	0.794315	4.987091e-24	8.641133e-20	1.234448e-20
8	8106516	7969881	NM_003291	TPP2	0.792730	7.088438e-24	1.228214e-19	1.535267e-20
9	8106516	8100026	NM_006095	ATP8A1	0.790472	1.163908e-23	2.016703e-19	2.240781e-20
10	8106516	8051928	NM_006036	PREPL	0.790318	1.203622e-23	2.085517e-19	2.085517e-20
11	8106516	8104838	NM_194283	DNAJC21	0.788033	1.975168e-23	3.422374e-19	3.111249e-20
12	8106516	8047038	NM_000534	PMS1	0.780086	1.055547e-22	1.828945e-18	1.524121e-19
13	8106516	8086077	NM_015097	CLASP2	0.779030	1.311726e-22	2.272827e-18	1.748329e-19
14	8106516	7989128	NM_144571	CNOT6L	0.778184	1.560150e-22	2.703272e-18	1.930908e-19
15	8106516	7917103	NM_015534	ZZZ3	0.777652	1.739188e-22	3.013491e-18	2.008994e-19
16	8106516	7909992	NM_015176	FBXO28	0.776776	2.078232e-22	3.600952e-18	2.250595e-19
17	8106516	7967386	NM_022782	MPHOSPH9	0.772448	4.954649e-22	8.584921e-18	5.049953e-19
18	8106516	7971246	NM_015058	KIAA0564	0.772296	5.106276e-22	8.847645e-18	4.915358e-19
19	8106516	8028227	NM_152604	ZNF383	0.772187	5.218058e-22	9.041330e-18	4.758595e-19
20	8106516	8054135	NM_012214	MGAT4A	0.771449	6.039117e-22	1.046398e-17	5.231989e-19
21	8106516	7946815	NM_002645	PIK3C2A	0.770429	7.382739e-22	1.279207e-17	6.091463e-19
22	8106516	8128472	NM_006828	ASCC3	0.770186	7.743325e-22	1.341686e-17	6.098572e-19
23	8106516	8099860	NM_002913	RFC1	0.769919	8.159606e-22	1.413815e-17	6.147022e-19
24	8106516	7947434	NM_033406	FBXO3	0.769742	8.448300e-22	1.463837e-17	6.099321e-19
25	8106516	8078110	NM_014296	CAPN7	0.769560	8.754922e-22	1.516965e-17	6.067861e-19
26	8106516	8174893	NM_001081550	THOC2	0.769328	9.160302e-22	1.587205e-17	6.104636e-19
27	8106516	7943620	NM_000051	ATM	0.767807	1.231802e-21	2.134343e-17	7.904974e-19
28	8106516	8051820	NM_022065	THADA	0.766064	1.724494e-21	2.988030e-17	1.067154e-18
29	8106516	8113733	NM_153223	CEP120	0.765912	1.775495e-21	3.076400e-17	1.060828e-18
30	8106516	7990092	NM_006901	MYO9A	0.765549	1.903881e-21	3.298855e-17	1.099618e-18
31	8106516	7969114	NM_031915	SETDB2	0.765509	1.918444e-21	3.324088e-17	1.072286e-18
32	8106516	8140878	NM_194455	KRIT1	0.765207	2.032736e-21	3.522121e-17	1.100663e-18
33	8106516	8101701	NM_152542	PPM1K	0.762232	3.577954e-21	6.199520e-17	1.878643e-18
34	8106516	7925364	NM_018072	HEATR1	0.760309	5.133626e-21	8.895034e-17	2.616186e-18
35	8106516	7903188	NM_021190	PTBP2	0.759968	5.470617e-21	9.478938e-17	2.708268e-18
36	8106516	8021312	NM_015285	WDR7	0.759534	5.931903e-21	1.027821e-16	2.855058e-18
37	8106516	7915995	NM_007051	FAF1	0.759248	6.256271e-21	1.084024e-16	2.929795e-18
38	8106516	8091562	NM_020865	DHX36	0.758789	6.812073e-21	1.180328e-16	3.106126e-18
39	8106516	8156718	NM_002486	NCBP1	0.757942	7.969398e-21	1.380858e-16	3.540661e-18
40	8106516	7916443	NM_015306	USP24	0.757793	8.190858e-21	1.419230e-16	3.548075e-18
41	8106516	7953878	NM_001004419	CLEC2D	0.757546	8.572688e-21	1.485390e-16	3.622902e-18
42	8106516	7954279	NM_153207	AEBP2	0.756719	9.983271e-21	1.729801e-16	4.118575e-18
43	8106516	8151074	NM_002603	PDE7A	0.755614	1.222146e-20	2.117613e-16	4.924682e-18
44	8106516	8050658	NM_017552	ATAD2B	0.755193	1.319749e-20	2.286729e-16	5.197112e-18
45	8106516	8134180	NM_019004	ANKIB1	0.755121	1.337332e-20	2.317196e-16	5.149324e-18
46	8106516	8130116	NM_004690	LATS1	0.755050	1.354687e-20	2.347267e-16	5.102753e-18
47	8106516	7938448	NM_017944	USP47	0.753751	1.715083e-20	2.971724e-16	6.322817e-18
48	8106516	8057719	NM_014362	HIBCH	0.753468	1.805292e-20	3.128029e-16	6.516728e-18
49	8106516	7969935	NM_000123	ERCC5	0.752546	2.131855e-20	3.693865e-16	7.538501e-18
50	8106516	8087951	NM_018165	PBRM1	0.751604	2.524875e-20	4.374850e-16	8.749701e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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