[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5659	8119670	NM_201523	KLC4		kinesin light chain 4

Fetching correlation data, please wait...
Getting list of correlations for id 5659.
Getting list of p-values for id 5659.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8119670	8045030	NM_001080527	MYO7B	0.659235	2.074462e-14	3.594420e-10	3.594420e-10
2	8119670	7913450	NM_005529	HSPG2	0.649084	6.960235e-14	1.206000e-9	6.029999e-10
3	8119670	8072316	NM_001017437	CCDC157	0.645646	1.038080e-13	1.798681e-9	5.995602e-10
4	8119670	8032829	NM_001080400	PLIN4	0.642008	1.575818e-13	2.730419e-9	6.826049e-10
5	8119670	8059028	NM_194302	CCDC108	0.641221	1.723587e-13	2.986458e-9	5.972917e-10
6	8119670	7905025	NM_000798	DRD5	0.640551	1.859823e-13	3.222516e-9	5.370860e-10
7	8119670	8038347	NM_003598	TEAD2	0.638631	2.310235e-13	4.002944e-9	5.718491e-10
8	8119670	7987701	NM_016642	SPTBN5	0.635576	3.252233e-13	5.635144e-9	7.043930e-10
9	8119670	8156247	NM_178828	C9orf79	0.634363	3.721312e-13	6.447917e-9	7.164352e-10
10	8119670	7951859	NM_000482	APOA4	0.634161	3.805674e-13	6.594092e-9	6.594092e-10
11	8119670	8159549	NM_004479	FUT7	0.628713	6.917382e-13	1.198575e-8	1.089613e-9
12	8119670	8083523	NM_003875	GMPS	-0.628033	7.447065e-13	1.290353e-8	1.075294e-9
13	8119670	8132270	NM_207172	NPSR1	0.627675	7.741685e-13	1.341402e-8	1.031847e-9
14	8119670	7979963	NM_012074	DPF3	0.626499	8.789249e-13	1.522913e-8	1.087795e-9
15	8119670	8082788	NM_001134422	CDV3	-0.624513	1.087788e-12	1.884811e-8	1.256541e-9
16	8119670	8053725	NM_000798	DRD5	0.623864	1.165953e-12	2.020246e-8	1.262654e-9
17	8119670	8084219	NM_017644	KLHL24	-0.622861	1.297493e-12	2.248167e-8	1.322451e-9
18	8119670	8043114	NM_031283	TCF7L1	0.622527	1.344341e-12	2.329340e-8	1.294078e-9
19	8119670	8130837	NM_024919	FRMD1	0.622476	1.351642e-12	2.341990e-8	1.232626e-9
20	8119670	7947540	NM_145803	TRAF6	-0.619150	1.920347e-12	3.327385e-8	1.663693e-9
21	8119670	7963438	NM_033448	KRT71	0.618149	2.132611e-12	3.695176e-8	1.759607e-9
22	8119670	8099926	NM_001100399	PDS5A	-0.617477	2.287759e-12	3.964000e-8	1.801818e-9
23	8119670	7911383	NM_017891	C1orf159	0.616951	2.416745e-12	4.187493e-8	1.820649e-9
24	8119670	8151609	NM_172239	REXO1L1	0.616822	2.449419e-12	4.244108e-8	1.768378e-9
25	8119670	8093360	NM_000283	PDE6B	0.615737	2.741447e-12	4.750106e-8	1.900042e-9
26	8119670	8028407	NM_000540	RYR1	0.615491	2.812279e-12	4.872836e-8	1.874168e-9
27	8119670	7960744	NM_001733	C1R	0.614280	3.187573e-12	5.523108e-8	2.045596e-9
28	8119670	8096556	NM_015143	METAP1	-0.613246	3.545712e-12	6.143655e-8	2.194162e-9
29	8119670	7980828	NM_001080414	CCDC88C	-0.612980	3.643757e-12	6.313538e-8	2.177082e-9
30	8119670	8042119	NM_022894	PAPOLG	-0.612929	3.662842e-12	6.346607e-8	2.115536e-9
31	8119670	8056909	NM_001880	ATF2	-0.612403	3.866216e-12	6.698992e-8	2.160965e-9
32	8119670	8086434	NM_144719	CCDC13	0.611288	4.333119e-12	7.507995e-8	2.346248e-9
33	8119670	7951987	NM_001077263	TMPRSS13	0.610843	4.534164e-12	7.856346e-8	2.380711e-9
34	8119670	8112121	NM_173514	SLC38A9	-0.610277	4.803109e-12	8.322347e-8	2.447749e-9
35	8119670	7954173	NM_007178	STRAP	-0.609594	5.148739e-12	8.921219e-8	2.548920e-9
36	8119670	8012054	NM_001365	DLG4	0.609311	5.298644e-12	9.180960e-8	2.550267e-9
37	8119670	8074888	ENST00000412037		0.609147	5.387381e-12	9.334715e-8	2.522896e-9
38	8119670	8066757	NM_022829	SLC13A3	0.608960	5.490298e-12	9.513040e-8	2.503431e-9
39	8119670	8029856	NM_004491	GRLF1	-0.608668	5.654850e-12	9.798158e-8	2.512348e-9
40	8119670	7949021	NM_173587	RCOR2	0.608514	5.743816e-12	9.952311e-8	2.488078e-9
41	8119670	7936762	NM_001001976	ATE1	-0.607922	6.097350e-12	1.056488e-7	2.576800e-9
42	8119670	8077192	NM_000482	APOA4	0.607623	6.284254e-12	1.088873e-7	2.592554e-9
43	8119670	7913571	NM_001102398	HNRNPR	-0.607221	6.543776e-12	1.133840e-7	2.636837e-9
44	8119670	8097600	NM_003601	SMARCA5	-0.606242	7.220397e-12	1.251078e-7	2.843359e-9
45	8119670	8089299	NM_001777	CD47	-0.606002	7.396254e-12	1.281549e-7	2.847887e-9
46	8119670	7956120	NM_001982	ERBB3	0.604933	8.231020e-12	1.426189e-7	3.100411e-9
47	8119670	8015554	NM_012285	KCNH4	0.604851	8.298129e-12	1.437817e-7	3.059185e-9
48	8119670	8001576	NM_033212	CCDC102A	0.604383	8.694754e-12	1.506540e-7	3.138625e-9
49	8119670	8008723	NM_000502	EPX	0.603762	9.249152e-12	1.602600e-7	3.270613e-9
50	8119670	7997880	NM_004933	CDH15	0.603575	9.423240e-12	1.632765e-7	3.265529e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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