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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
2511 7928838 NM_007078 LDB3 link to infopage LIM domain binding 3

Fetching correlation data, please wait...
Getting list of correlations for id 2511.
Getting list of p-values for id 2511.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7928838 7937560 NM_002457 MUC2 link to infopage 0.776749 2.089862e-22 3.621104e-18 3.621104e-18
2 7928838 7931097 NM_002775 HTRA1 link to infopage 0.771414 6.081210e-22 1.053691e-17 5.268457e-18
3 7928838 8039362 NM_178837 C19orf51 link to infopage 0.769221 9.353370e-22 1.620658e-17 5.402195e-18
4 7928838 8025053 NM_003811 TNFSF9 link to infopage 0.765589 1.889337e-21 3.273654e-17 8.184135e-18
5 7928838 7970241 NM_000504 F10 link to infopage 0.765390 1.962775e-21 3.400900e-17 6.801800e-18
6 7928838 8131056 NM_017781 CYP2W1 link to infopage 0.762887 3.161262e-21 5.477519e-17 9.129198e-18
7 7928838 7920744 NM_000298 PKLR link to infopage 0.760060 5.377611e-21 9.317787e-17 1.331112e-17
8 7928838 7987701 NM_016642 SPTBN5 link to infopage 0.758846 6.741452e-21 1.168091e-16 1.460114e-17
9 7928838 8086222 NM_001099404 SCN5A link to infopage 0.757930 7.986664e-21 1.383849e-16 1.537610e-17
10 7928838 7990928 ENST00000342039 link to infopage 0.756672 1.006912e-20 1.744676e-16 1.744676e-17
11 7928838 7985459 ENST00000342039 link to infopage 0.756672 1.006912e-20 1.744676e-16 1.586069e-17
12 7928838 7985418 ENST00000342039 link to infopage 0.756672 1.006912e-20 1.744676e-16 1.453897e-17
13 7928838 7903632 NM_001408 CELSR2 link to infopage 0.754972 1.374034e-20 2.380789e-16 1.831376e-17
14 7928838 8001014 NM_173502 PRSS36 link to infopage 0.754221 1.575038e-20 2.729069e-16 1.949335e-17
15 7928838 7967641 NM_133448 TMEM132D link to infopage 0.748801 4.159126e-20 7.206518e-16 4.804346e-17
16 7928838 7952893 BC024764 IQSEC3 link to infopage 0.747604 5.136603e-20 8.900192e-16 5.562620e-17
17 7928838 7935535 NM_018058 CRTAC1 link to infopage 0.745710 7.155630e-20 1.239856e-15 7.293271e-17
18 7928838 8028407 NM_000540 RYR1 link to infopage 0.745395 7.560193e-20 1.309955e-15 7.277526e-17
19 7928838 7937073 ENST00000341866 link to infopage 0.744971 8.138142e-20 1.410096e-15 7.421557e-17
20 7928838 8115691 NM_003062 SLIT3 link to infopage 0.744751 8.455638e-20 1.465108e-15 7.325542e-17
21 7928838 7936882 NM_001146340 NKX1-2 link to infopage 0.744280 9.174129e-20 1.589601e-15 7.569530e-17
22 7928838 7913450 NM_005529 HSPG2 link to infopage 0.744127 9.420482e-20 1.632287e-15 7.419486e-17
23 7928838 8049942 NM_080741 NEU4 link to infopage 0.744082 9.494703e-20 1.645147e-15 7.152814e-17
24 7928838 8151607 NR_003594 REXO1L2P link to infopage 0.743015 1.141303e-19 1.977537e-15 8.239736e-17
25 7928838 8151623 NR_003594 REXO1L2P link to infopage 0.743015 1.141303e-19 1.977537e-15 7.910146e-17
26 7928838 8151603 NR_003594 REXO1L2P link to infopage 0.743015 1.141303e-19 1.977537e-15 7.605910e-17
27 7928838 8024768 NM_133475 ANKRD24 link to infopage 0.742695 1.205945e-19 2.089541e-15 7.739042e-17
28 7928838 8104253 NM_033120 NKD2 link to infopage 0.742133 1.328061e-19 2.301130e-15 8.218323e-17
29 7928838 8164077 NM_004959 NR5A1 link to infopage 0.741136 1.575095e-19 2.729167e-15 9.410922e-17
30 7928838 7997569 NM_139174 ADAD2 link to infopage 0.741095 1.586308e-19 2.748596e-15 9.161986e-17
31 7928838 8018220 NM_000835 GRIN2C link to infopage 0.740704 1.695408e-19 2.937633e-15 9.476235e-17
32 7928838 8005328 NM_016239 MYO15A link to infopage 0.740386 1.789757e-19 3.101112e-15 9.690975e-17
33 7928838 8038577 NM_001024656 ASPDH link to infopage 0.739977 1.918704e-19 3.324539e-15 1.007436e-16
34 7928838 7896985 NM_080875 MIB2 link to infopage 0.739587 2.049838e-19 3.551754e-15 1.044633e-16
35 7928838 8060604 NM_000915 OXT link to infopage 0.739255 2.168347e-19 3.757095e-15 1.073456e-16
36 7928838 7935553 NM_032211 LOXL4 link to infopage 0.739122 2.217851e-19 3.842870e-15 1.067464e-16
37 7928838 7990683 NM_015162 ACSBG1 link to infopage 0.739108 2.223159e-19 3.852067e-15 1.041099e-16
38 7928838 8030220 NM_003660 PPFIA3 link to infopage 0.738816 2.335573e-19 4.046848e-15 1.064960e-16
39 7928838 8159670 NM_006647 NOXA1 link to infopage 0.738030 2.666376e-19 4.620029e-15 1.184623e-16
40 7928838 8162283 NM_004560 ROR2 link to infopage 0.737985 2.686699e-19 4.655244e-15 1.163811e-16
41 7928838 8157818 NM_001045476 WDR38 link to infopage 0.737796 2.773155e-19 4.805046e-15 1.171962e-16
42 7928838 8030015 NM_012451 SYNGR4 link to infopage 0.737731 2.803681e-19 4.857938e-15 1.156652e-16
43 7928838 7899075 NM_004455 EXTL1 link to infopage 0.735719 3.925389e-19 6.801521e-15 1.581749e-16
44 7928838 8033674 NM_024690 MUC16 link to infopage 0.735476 4.087525e-19 7.082454e-15 1.609649e-16
45 7928838 8037513 NM_138568 EXOC3L2 link to infopage 0.735442 4.110642e-19 7.122510e-15 1.582780e-16
46 7928838 8142830 NM_199349 KCP link to infopage 0.735420 4.126053e-19 7.149211e-15 1.554176e-16
47 7928838 8087116 NM_001008269 TMEM89 link to infopage 0.735350 4.174316e-19 7.232837e-15 1.538902e-16
48 7928838 8119435 NM_004828 NCR2 link to infopage 0.735295 4.212773e-19 7.299473e-15 1.520723e-16
49 7928838 8116033 NM_000505 F12 link to infopage 0.734785 4.584962e-19 7.944364e-15 1.621299e-16
50 7928838 8151619 NR_003594 REXO1L2P link to infopage 0.734777 4.590461e-19 7.953892e-15 1.590778e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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