[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1398	7972737	NM_002312	LIG4		ligase IV, DNA, ATP-dependent

Fetching correlation data, please wait...
Getting list of correlations for id 1398.
Getting list of p-values for id 1398.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7972737	7917604	NM_201269	ZNF644	0.653926	3.929781e-14	6.809131e-10	6.809131e-10
2	7972737	8025998	NM_003437	ZNF136	0.651710	5.111488e-14	8.856675e-10	4.428338e-10
3	7972737	8096463	NM_001128429	SMARCAD1	0.630865	5.470718e-13	9.479112e-9	3.159704e-9
4	7972737	8045619	NM_015630	EPC2	0.614468	3.126137e-12	5.416658e-8	1.354164e-8
5	7972737	8030978	NM_138374	ZNF845	0.609152	5.384596e-12	9.329890e-8	1.865978e-8
6	7972737	7947221	NM_018362	LIN7C	0.607425	6.410784e-12	1.110797e-7	1.851328e-8
7	7972737	8046997	NM_019048	ASNSD1	0.606520	7.021775e-12	1.216663e-7	1.738090e-8
8	7972737	8101934	NM_001031723	DNAJB14	0.605786	7.557968e-12	1.309569e-7	1.636961e-8
9	7972737	7989159	NM_017661	ZNF280D	0.605650	7.661316e-12	1.327476e-7	1.474974e-8
10	7972737	7988605	NM_004236	COPS2	0.605035	8.147578e-12	1.411731e-7	1.411731e-8
11	7972737	7918847	NM_001102396	SIKE1	0.604103	8.940625e-12	1.549142e-7	1.408311e-8
12	7972737	7936567	NM_014904	RAB11FIP2	0.602600	1.037944e-11	1.798445e-7	1.498704e-8
13	7972737	8020898	NR_024565	ZNF271	0.601147	1.198178e-11	2.076083e-7	1.596987e-8
14	7972737	8022914	NM_018170	RPRD1A	0.599715	1.379302e-11	2.389916e-7	1.707083e-8
15	7972737	8113591	NM_005023	PGGT1B	0.597021	1.794111e-11	3.108655e-7	2.072437e-8
16	7972737	7929562	NM_014803	ZNF518A	0.596601	1.868745e-11	3.237975e-7	2.023734e-8
17	7972737	8028186	NM_007145	ZNF146	0.595307	2.118053e-11	3.669950e-7	2.158794e-8
18	7972737	7969979	NM_032859	ABHD13	0.593670	2.479671e-11	4.296525e-7	2.386959e-8
19	7972737	8099395	NM_004249	RAB28	0.593405	2.543651e-11	4.407384e-7	2.319676e-8
20	7972737	7991057	NM_025238	BTBD1	0.593299	2.569717e-11	4.452549e-7	2.226275e-8
21	7972737	8088526	NM_025075	THOC7	0.592585	2.751479e-11	4.767487e-7	2.270232e-8
22	7972737	8053648	NM_016618	KRCC1	0.592202	2.854078e-11	4.945261e-7	2.247846e-8
23	7972737	8020323	NM_003799	RNMT	0.591652	3.008063e-11	5.212072e-7	2.266118e-8
24	7972737	7976080	NM_003608	GPR65	0.591529	3.043462e-11	5.273407e-7	2.197253e-8
25	7972737	8083794	NM_018657	MYNN	0.591393	3.083096e-11	5.342081e-7	2.136832e-8
26	7972737	8160405	NM_018847	KLHL9	0.590028	3.510181e-11	6.082090e-7	2.339266e-8
27	7972737	8140942	NM_001040057	FAM133B	0.589485	3.695544e-11	6.403270e-7	2.371581e-8
28	7972737	8022473	NM_052911	ESCO1	0.589317	3.754781e-11	6.505909e-7	2.323539e-8
29	7972737	7970569	NM_014363	SACS	0.587036	4.655269e-11	8.066185e-7	2.781443e-8
30	7972737	8131292	NM_021163	RBAK	0.586864	4.731100e-11	8.197577e-7	2.732526e-8
31	7972737	7943314	NM_003772	JRKL	0.586861	4.732556e-11	8.200099e-7	2.645193e-8
32	7972737	8047606	NM_001099273	NBEAL1	0.585645	5.303223e-11	9.188894e-7	2.871529e-8
33	7972737	7902634	NM_025065	RPF1	0.585041	5.610431e-11	9.721193e-7	2.945816e-8
34	7972737	7910539	NM_001010984	C1orf124	0.583781	6.308587e-11	1.093089e-6	3.214967e-8
35	7972737	8092265	NM_020409	MRPL47	0.583427	6.518970e-11	1.129542e-6	3.227262e-8
36	7972737	8081953	NM_005513	GTF2E1	0.583272	6.613662e-11	1.145949e-6	3.183192e-8
37	7972737	8147994	NM_032334	UTP23	0.583253	6.625441e-11	1.147990e-6	3.102676e-8
38	7972737	8020903	NM_020474	GALNT1	0.583183	6.668458e-11	1.155444e-6	3.040641e-8
39	7972737	7927786	NM_001001330	REEP3	0.582793	6.913233e-11	1.197856e-6	3.071426e-8
40	7972737	8142307	NM_015723	PNPLA8	0.582752	6.939800e-11	1.202459e-6	3.006148e-8
41	7972737	7950544	NM_004705	PRKRIR	0.582197	7.304705e-11	1.265686e-6	3.087039e-8
42	7972737	8055913	NM_017892	PRPF40A	0.581857	7.538155e-11	1.306136e-6	3.109848e-8
43	7972737	7957613	NM_017599	VEZT	0.581553	7.751796e-11	1.343154e-6	3.123613e-8
44	7972737	7913712	NM_006625	SRSF10	0.581331	7.912104e-11	1.370930e-6	3.115751e-8
45	7972737	7989885	NM_001031723	DNAJB14	0.580690	8.392680e-11	1.454200e-6	3.231555e-8
46	7972737	7898725	NM_005747	CELA3A	-0.580668	8.409384e-11	1.457094e-6	3.167596e-8
47	7972737	8020068	NM_015208	ANKRD12	0.580335	8.670998e-11	1.502424e-6	3.196647e-8
48	7972737	7917088	NM_005482	PIGK	0.579736	9.160432e-11	1.587228e-6	3.306725e-8
49	7972737	7974473	NM_017943	FBXO34	0.579359	9.482133e-11	1.642969e-6	3.352998e-8
50	7972737	8035842	NM_003430	ZNF91	0.579117	9.693955e-11	1.679672e-6	3.359343e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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