[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2441	7995803	AF348994	MT1JP		metallothionein 1J (pseudogene)

Fetching correlation data, please wait...
Getting list of correlations for id 2441.
Getting list of p-values for id 2441.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7995803	7925413	AF333388	MT1P2	0.598568	1.543151e-11	2.673818e-7	2.673818e-7
2	7995803	8024896	hsa-mir-7-3		0.586571	4.863059e-11	8.426223e-7	4.213111e-7
3	7995803	8156415	NM_006648	WNK2	0.586196	5.036757e-11	8.727188e-7	2.909063e-7
4	7995803	8044263	NM_006267	RANBP2	-0.579033	9.768350e-11	1.692562e-6	4.231405e-7
5	7995803	8095362	NM_005953	MT2A	0.570199	2.163581e-10	3.748837e-6	7.497675e-7
6	7995803	7899343	NM_005281	GPR3	0.569959	2.210146e-10	3.829520e-6	6.382533e-7
7	7995803	8170513	NM_033085	FATE1	0.566940	2.884164e-10	4.997391e-6	7.139130e-7
8	7995803	7955184	NM_006262	PRPH	0.565147	3.373681e-10	5.845577e-6	7.306972e-7
9	7995803	8019576	NM_033184	KRTAP2-4	0.564204	3.662335e-10	6.345728e-6	7.050809e-7
10	7995803	8015210	NM_033184	KRTAP2-4	0.564204	3.662335e-10	6.345728e-6	6.345728e-7
11	7995803	8021924	NM_005131	THOC1	-0.563726	3.817796e-10	6.615096e-6	6.013723e-7
12	7995803	8091342	NM_032153	ZIC4	0.563246	3.979851e-10	6.895887e-6	5.746573e-7
13	7995803	8035648	NM_001001524	TM6SF2	0.562012	4.428053e-10	7.672488e-6	5.901914e-7
14	7995803	8099926	NM_001100399	PDS5A	-0.561203	4.747721e-10	8.226376e-6	5.875983e-7
15	7995803	7900792	NM_002840	PTPRF	0.559744	5.381498e-10	9.324521e-6	6.216348e-7
16	7995803	8043283	NM_018433	KDM3A	-0.559569	5.462587e-10	9.465025e-6	5.915641e-7
17	7995803	8162531	ENST00000245183		0.557442	6.549574e-10	1.134845e-5	6.675557e-7
18	7995803	8071339	NM_013373	ZDHHC8	0.557310	6.623010e-10	1.147569e-5	6.375383e-7
19	7995803	8097568	AK126441	FLJ44477	0.556845	6.889693e-10	1.193777e-5	6.283037e-7
20	7995803	7926609	NM_005180	BMI1	-0.556218	7.265698e-10	1.258928e-5	6.294638e-7
21	7995803	7903632	NM_001408	CELSR2	0.554581	8.343100e-10	1.445609e-5	6.883852e-7
22	7995803	7906284	NM_144702	C1orf92	0.550480	1.175603e-9	2.036967e-5	9.258942e-7
23	7995803	7903239	NM_000028	AGL	-0.550406	1.182872e-9	2.049562e-5	8.911139e-7
24	7995803	8041360	NM_017735	TTC27	-0.549371	1.288841e-9	2.233175e-5	9.304894e-7
25	7995803	7963880	NM_001144996	ITGA7	0.547863	1.459627e-9	2.529095e-5	1.011638e-6
26	7995803	7995820	NM_005947	MT1B	0.547514	1.502243e-9	2.602936e-5	1.001129e-6
27	7995803	8124397	NM_005319	HIST1H1C	-0.547413	1.514708e-9	2.624535e-5	9.720498e-7
28	7995803	8160238	NM_033222	PSIP1	-0.547331	1.524990e-9	2.642351e-5	9.436967e-7
29	7995803	7916562	NM_002136	HNRNPA1	-0.546959	1.572336e-9	2.724387e-5	9.394439e-7
30	7995803	8086908	NM_001130082	PLXNB1	0.546932	1.575865e-9	2.730501e-5	9.101669e-7
31	7995803	8087453	NM_198722	AMIGO3	0.546694	1.606894e-9	2.784266e-5	8.981502e-7
32	7995803	7998494	NM_001143980	CCDC154	0.546347	1.653234e-9	2.864559e-5	8.951746e-7
33	7995803	7973580	NM_203402	FITM1	0.546284	1.661846e-9	2.879480e-5	8.725697e-7
34	7995803	7904340	NM_006699	MAN1A2	-0.544216	1.967531e-9	3.409140e-5	1.002688e-6
35	7995803	8105778	NM_181523	PIK3R1	-0.543726	2.047439e-9	3.547598e-5	1.013599e-6
36	7995803	7897714	NM_001014765	FBXO44	0.543721	2.048248e-9	3.548999e-5	9.858332e-7
37	7995803	7995206	NM_001042454	TGFB1I1	0.543518	2.082344e-9	3.608078e-5	9.751561e-7
38	7995803	8019574	NM_033184	KRTAP2-4	0.542668	2.230985e-9	3.865628e-5	1.017270e-6
39	7995803	8015214	NM_033184	KRTAP2-4	0.542668	2.230985e-9	3.865628e-5	9.911866e-7
40	7995803	7955663	NM_170754	TENC1	0.542552	2.252049e-9	3.902125e-5	9.755311e-7
41	7995803	8013606	NM_000638	VTN	0.541789	2.395128e-9	4.150039e-5	1.012205e-6
42	7995803	8156263	NM_006717	SPIN1	-0.541713	2.409989e-9	4.175787e-5	9.942351e-7
43	7995803	8086222	NM_001099404	SCN5A	0.540874	2.578496e-9	4.467761e-5	1.039014e-6
44	7995803	7984016	NM_207322	C2CD4A	0.538889	3.023706e-9	5.239176e-5	1.190722e-6
45	7995803	8069985	NR_002996	SNORA80	0.538796	3.046209e-9	5.278167e-5	1.172926e-6
46	7995803	7898713	NM_007352	CELA3B	0.538789	3.048017e-9	5.281299e-5	1.148108e-6
47	7995803	8151609	NM_172239	REXO1L1	0.538167	3.203133e-9	5.550068e-5	1.180866e-6
48	7995803	8098721	ENST00000362702		0.538151	3.207298e-9	5.557285e-5	1.157768e-6
49	7995803	8054064	NM_025190	ANKRD36B	-0.537237	3.449502e-9	5.976951e-5	1.219786e-6
50	7995803	7997767	NM_153813	ZFPM1	0.537177	3.466010e-9	6.005555e-5	1.201111e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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