[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16371	8095376	NM_005953	MT2A		metallothionein 2A
16587	8095362	NM_005953	MT2A		metallothionein 2A
16917	7995783	NM_005953	MT2A		metallothionein 2A

Fetching correlation data, please wait...
Getting list of correlations for id 16371.
Getting list of p-values for id 16371.
1 of 3 done.
Getting list of correlations for id 16587.
Getting list of p-values for id 16587.
2 of 3 done.
Getting list of correlations for id 16917.
Getting list of p-values for id 16917.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.384 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8095376	8095362	NM_005953	MT2A	0.985963	6.759725e-82	3.513773e-77	3.513773e-77
2	8095362	8095376	NM_005953	MT2A	0.985963	6.759725e-82	3.513773e-77	1.756886e-77
3	8095362	8162531	ENST00000245183		0.886071	3.579581e-36	1.860702e-31	6.202340e-32
4	8095376	8162531	ENST00000245183		0.878852	7.006995e-35	3.642306e-30	9.105765e-31
5	7995783	8162531	ENST00000245183		0.864680	1.436930e-32	7.469307e-28	1.493861e-28
6	8095376	7995783	NM_005953	MT2A	0.819505	1.187091e-26	6.170615e-22	1.028436e-22
7	7995783	8095376	NM_005953	MT2A	0.819505	1.187091e-26	6.170615e-22	8.815165e-23
8	7995783	8095362	NM_005953	MT2A	0.804537	4.779281e-25	2.484318e-20	3.105398e-21
9	8095362	7995783	NM_005953	MT2A	0.804537	4.779281e-25	2.484318e-20	2.760353e-21
10	8095362	8001531	NM_005950	MT1G	0.659215	2.079536e-14	1.080964e-9	1.080964e-10
11	8095362	7995813	NR_027781	MT1DP	0.657893	2.440874e-14	1.268791e-9	1.153446e-10
12	8095376	7995813	NR_027781	MT1DP	0.649220	6.850316e-14	3.560863e-9	2.967386e-10
13	8095376	8001531	NM_005950	MT1G	0.648965	7.057804e-14	3.668717e-9	2.822090e-10
14	8095362	7995820	NM_005947	MT1B	0.629120	6.618207e-13	3.440210e-8	2.457293e-9
15	7995783	7958895	NM_006187	OAS3	0.624449	1.095255e-12	5.693246e-8	3.795497e-9
16	8095376	8125993	NM_016135	ETV7	0.612655	3.767254e-12	1.958256e-7	1.223910e-8
17	8095376	7995820	NM_005947	MT1B	0.602333	1.065776e-11	5.540009e-7	3.258829e-8
18	8095362	8125993	NM_016135	ETV7	0.601595	1.146375e-11	5.958974e-7	3.310541e-8
19	8095376	7995793	NR_001447	MT1L	0.596801	1.832842e-11	9.527296e-7	5.014367e-8
20	8095362	7995793	NR_001447	MT1L	0.594966	2.188839e-11	1.137781e-6	5.688903e-8
21	7995783	7958913	NM_002535	OAS2	0.590993	3.202780e-11	1.664837e-6	7.927796e-8
22	7995783	8148572	NM_002346	LY6E	0.586980	4.679900e-11	2.432659e-6	1.105754e-7
23	7995783	7984779	NM_033240	PML	0.581475	7.807952e-11	4.058652e-6	1.764631e-7
24	7995783	7958884	NM_016816	OAS1	0.578146	1.059147e-10	5.505553e-6	2.293981e-7
25	7995783	8047272	NM_015535	SPATS2L	0.576212	1.262518e-10	6.562697e-6	2.625079e-7
26	7995783	8004184	NM_017523	XAF1	0.575310	1.369755e-10	7.120123e-6	2.738509e-7
27	7995783	7914127	NM_002038	IFI6	0.573096	1.671284e-10	8.687501e-6	3.217593e-7
28	8095362	7995797	NM_175617	MT1E	0.572551	1.754834e-10	9.121804e-6	3.257787e-7
29	7995783	7967117	NM_003733	OASL	0.572301	1.794376e-10	9.327345e-6	3.216326e-7
30	8095362	7995803	AF348994	MT1JP	0.570199	2.163581e-10	1.124651e-5	3.748837e-7
31	7995783	8040080	NM_080657	RSAD2	0.567794	2.675714e-10	1.390863e-5	4.486655e-7
32	8095362	7925413	AF333388	MT1P2	0.566030	3.123321e-10	1.623534e-5	5.073542e-7
33	7995783	7964119	NM_005419	STAT2	0.565721	3.208892e-10	1.668014e-5	5.054588e-7
34	7995783	8074606	NM_017414	USP18	0.565510	3.268475e-10	1.698986e-5	4.997018e-7
35	8095362	7961693	NM_002300	LDHB	-0.565369	3.309023e-10	1.720063e-5	4.914466e-7
36	8095376	7995797	NM_175617	MT1E	0.564914	3.443126e-10	1.789771e-5	4.971586e-7
37	7995783	8067221	NM_030776	ZBP1	0.561103	4.789047e-10	2.489395e-5	6.728093e-7
38	8095362	8113881	NM_016340	RAPGEF6	-0.560649	4.979713e-10	2.588504e-5	6.811854e-7
39	8095376	8092348	NM_014398	LAMP3	0.559677	5.412265e-10	2.813349e-5	7.213716e-7
40	8095376	7925413	AF333388	MT1P2	0.559169	5.653059e-10	2.938517e-5	7.346291e-7
41	8095376	8113881	NM_016340	RAPGEF6	-0.557566	6.480916e-10	3.368845e-5	8.216695e-7
42	8095362	8108475	NM_001007189	C5orf53	-0.552437	9.987045e-10	5.191366e-5	1.236040e-6
43	8095376	7961693	NM_002300	LDHB	-0.551963	1.039036e-9	5.401013e-5	1.256049e-6
44	8095376	8108475	NM_001007189	C5orf53	-0.551566	1.073994e-9	5.582730e-5	1.268802e-6
45	7995783	8050102	NM_207315	CMPK2	0.551504	1.079563e-9	5.611678e-5	1.247040e-6
46	8095376	7940028	NM_000062	SERPING1	0.550767	1.147901e-9	5.966902e-5	1.297153e-6
47	8095362	8092348	NM_014398	LAMP3	0.550418	1.181649e-9	6.142329e-5	1.306879e-6
48	8095376	7995806	NM_005946	MT1A	0.549290	1.297527e-9	6.744677e-5	1.405141e-6
49	8095362	7995806	NM_005946	MT1A	0.549195	1.307671e-9	6.797402e-5	1.387225e-6
50	7995783	8037913	NM_003827	NAPA	0.546238	1.668035e-9	8.670613e-5	1.734123e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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