[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6814	7956287	NM_005967	NAB2		NGFI-A binding protein 2 (EGR1 binding protein 2)

Fetching correlation data, please wait...
Getting list of correlations for id 6814.
Getting list of p-values for id 6814.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7956287	7899101	NM_006314	CNKSR1	0.677520	2.075373e-15	3.595998e-11	3.595998e-11
2	7956287	8038150	NM_182574	MAMSTR	0.662248	1.435318e-14	2.486976e-10	1.243488e-10
3	7956287	7928882	NM_006829	C10orf116	0.657635	2.518179e-14	4.363248e-10	1.454416e-10
4	7956287	8164940	NM_001134707	SARDH	0.651214	5.419489e-14	9.390349e-10	2.347587e-10
5	7956287	7923372	NM_012396	PHLDA3	0.648198	7.719262e-14	1.337516e-9	2.675033e-10
6	7956287	7968242	NM_002097	GTF3A	-0.645270	1.084070e-13	1.878369e-9	3.130615e-10
7	7956287	8030220	NM_003660	PPFIA3	0.644585	1.173137e-13	2.032694e-9	2.903848e-10
8	7956287	8037614	NM_005282	GPR4	0.641055	1.756268e-13	3.043085e-9	3.803857e-10
9	7956287	8048541	NM_001927	DES	0.638783	2.271088e-13	3.935114e-9	4.372349e-10
10	7956287	8045381	NM_058241	CCNT2	-0.638560	2.328715e-13	4.034964e-9	4.034964e-10
11	7956287	8170753	NM_014370	SRPK3	0.638020	2.474418e-13	4.287424e-9	3.897658e-10
12	7956287	8090823	NM_005630	SLCO2A1	0.636955	2.788398e-13	4.831457e-9	4.026214e-10
13	7956287	7950005	NM_001098515	MRGPRF	0.635631	3.232627e-13	5.601174e-9	4.308595e-10
14	7956287	8024013	BC052236	C19orf21	0.635593	3.246008e-13	5.624358e-9	4.017398e-10
15	7956287	8105545	NM_016338	IPO11	-0.634815	3.539557e-13	6.132991e-9	4.088661e-10
16	7956287	8087907	NM_020163	SEMA3G	0.633668	4.019164e-13	6.964006e-9	4.352504e-10
17	7956287	7946703	NM_016451	COPB1	-0.630065	5.970753e-13	1.034552e-8	6.085602e-10
18	7956287	7994161	NM_006910	RBBP6	-0.629936	6.055385e-13	1.049217e-8	5.828981e-10
19	7956287	7989323	NM_004330	BNIP2	-0.629846	6.115059e-13	1.059556e-8	5.576612e-10
20	7956287	8067602	NM_152864	NKAIN4	0.629409	6.412952e-13	1.111172e-8	5.555861e-10
21	7956287	7968333	NM_005800	USPL1	-0.629399	6.419946e-13	1.112384e-8	5.297067e-10
22	7956287	7970241	NM_000504	F10	0.628945	6.745069e-13	1.168718e-8	5.312355e-10
23	7956287	8158009	NM_014580	SLC2A8	0.628762	6.880365e-13	1.192161e-8	5.183308e-10
24	7956287	7969243	NM_018204	CKAP2	-0.628566	7.028836e-13	1.217887e-8	5.074527e-10
25	7956287	8061324	NM_012255	XRN2	-0.628188	7.322534e-13	1.268775e-8	5.075102e-10
26	7956287	8049919	NM_152783	D2HGDH	0.627599	7.805045e-13	1.352380e-8	5.201462e-10
27	7956287	8105714	NM_139168	SFRS12	-0.627542	7.853641e-13	1.360800e-8	5.040002e-10
28	7956287	7929596	NM_032440	LCOR	-0.627040	8.291619e-13	1.436689e-8	5.131031e-10
29	7956287	8109403	NR_024152	MFAP3	-0.625368	9.925679e-13	1.719822e-8	5.930422e-10
30	7956287	7956937	NM_015646	RAP1B	-0.625153	1.015765e-12	1.760015e-8	5.866718e-10
31	7956287	8009631	NM_181790	GPR142	0.625016	1.030750e-12	1.785980e-8	5.761225e-10
32	7956287	7973770	NM_016106	SCFD1	-0.625014	1.030965e-12	1.786353e-8	5.582353e-10
33	7956287	8026900	NM_002248	KCNN1	0.624849	1.049430e-12	1.818347e-8	5.510141e-10
34	7956287	7986665	NM_030922	NIPA2	-0.622897	1.292546e-12	2.239594e-8	6.587042e-10
35	7956287	7952893	BC024764	IQSEC3	0.622820	1.303048e-12	2.257791e-8	6.450832e-10
36	7956287	8078360	NM_178862	STT3B	-0.622652	1.326545e-12	2.298505e-8	6.384735e-10
37	7956287	7908978	NM_014827	ZC3H11A	-0.621879	1.439978e-12	2.495051e-8	6.743380e-10
38	7956287	7998843	NM_031948	PRSS27	0.621411	1.513195e-12	2.621914e-8	6.899773e-10
39	7956287	7977987	NM_002471	MYH6	0.620741	1.624207e-12	2.814263e-8	7.216058e-10
40	7956287	7998297	NM_153350	FBXL16	0.620728	1.626433e-12	2.818121e-8	7.045301e-10
41	7956287	8153459	NM_023078	PYCRL	0.619745	1.804000e-12	3.125790e-8	7.623878e-10
42	7956287	8022882	NM_006965	ZNF24	-0.619414	1.867768e-12	3.236282e-8	7.705434e-10
43	7956287	7983335	NM_016396	CTDSPL2	-0.618713	2.010422e-12	3.483459e-8	8.101068e-10
44	7956287	8024373	NM_001039846	IZUMO4	0.618006	2.164761e-12	3.750882e-8	8.524732e-10
45	7956287	8128669	NM_014028	OSTM1	-0.617865	2.196870e-12	3.806516e-8	8.458925e-10
46	7956287	7972723	NM_018011	ARGLU1	-0.617505	2.281016e-12	3.952317e-8	8.591993e-10
47	7956287	7916969	NM_005455	ZRANB2	-0.617185	2.358336e-12	4.086289e-8	8.694231e-10
48	7956287	8041902	NM_002158	FOXN2	-0.616816	2.450906e-12	4.246685e-8	8.847261e-10
49	7956287	8131195	NM_133463	AMZ1	0.616743	2.469550e-12	4.278989e-8	8.732631e-10
50	7956287	8008723	NM_000502	EPX	0.616018	2.662908e-12	4.614021e-8	9.228041e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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