[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4746	7977987	NM_002471	MYH6		myosin, heavy chain 6, cardiac muscle, alpha

Fetching correlation data, please wait...
Getting list of correlations for id 4746.
Getting list of p-values for id 4746.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.174 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7977987	8066451	NM_182970	RIMS4	0.758056	7.803599e-21	1.352130e-16	1.352130e-16
2	7977987	8004842	NM_173728	ARHGEF15	0.754799	1.418050e-20	2.457054e-16	1.228527e-16
3	7977987	7975747	NM_001933	DLST	-0.752001	2.351232e-20	4.073980e-16	1.357993e-16
4	7977987	7936683	NM_001033925	TIAL1	-0.748370	4.488159e-20	7.776632e-16	1.944158e-16
5	7977987	7936762	NM_001001976	ATE1	-0.745966	6.843373e-20	1.185751e-15	2.371502e-16
6	7977987	7981249	NM_032233	SETD3	-0.744805	8.375915e-20	1.451295e-15	2.418825e-16
7	7977987	8110821	NM_001044	SLC6A3	0.742814	1.181626e-19	2.047404e-15	2.924863e-16
8	7977987	8090840	NM_001005861	RYK	-0.737059	3.138376e-19	5.437865e-15	6.797331e-16
9	7977987	8095048	NM_030917	FIP1L1	-0.727440	1.519262e-18	2.632425e-14	2.924917e-15
10	7977987	8073799	NM_013236	ATXN10	-0.726393	1.796402e-18	3.112625e-14	3.112625e-15
11	7977987	8173629	NM_004299	ABCB7	-0.725559	2.051775e-18	3.555110e-14	3.231918e-15
12	7977987	8096556	NM_015143	METAP1	-0.725303	2.137191e-18	3.703110e-14	3.085925e-15
13	7977987	7928882	NM_006829	C10orf116	0.724288	2.510526e-18	4.349989e-14	3.346145e-15
14	7977987	8001496	NM_007006	NUDT21	-0.724287	2.511002e-18	4.350813e-14	3.107723e-15
15	7977987	7974771	NM_022495	C14orf135	-0.721383	3.964330e-18	6.868994e-14	4.579329e-15
16	7977987	8150197	NM_024025	DUSP26	0.720749	4.376593e-18	7.583323e-14	4.739577e-15
17	7977987	8132580	NM_006555	YKT6	-0.720451	4.584394e-18	7.943379e-14	4.672576e-15
18	7977987	8096538	NM_001100426	RAP1GDS1	-0.717418	7.326848e-18	1.269523e-13	7.052905e-15
19	7977987	8163548	NM_138424	KIF12	0.716957	7.863748e-18	1.362552e-13	7.171324e-15
20	7977987	8067602	NM_152864	NKAIN4	0.714661	1.116250e-17	1.934127e-13	9.670636e-15
21	7977987	8106479	NM_004866	SCAMP1	-0.714141	1.207763e-17	2.092692e-13	9.965199e-15
22	7977987	8034151	NM_020812	DOCK6	0.713983	1.237043e-17	2.143425e-13	9.742839e-15
23	7977987	8150928	NM_003580	NSMAF	-0.713032	1.428230e-17	2.474694e-13	1.075954e-14
24	7977987	8140828	NM_003130	SRI	-0.712602	1.523695e-17	2.640107e-13	1.100045e-14
25	7977987	8046604	NM_003659	AGPS	-0.712349	1.582971e-17	2.742814e-13	1.097126e-14
26	7977987	7930956	NM_007190	SEC23IP	-0.711804	1.717773e-17	2.976385e-13	1.144764e-14
27	7977987	7896921	NM_152228	TAS1R3	0.711118	1.903703e-17	3.298545e-13	1.221684e-14
28	7977987	8017235	NM_006380	APPBP2	-0.710876	1.973661e-17	3.419763e-13	1.221344e-14
29	7977987	8033487	NM_032447	FBN3	0.710778	2.003010e-17	3.470615e-13	1.196764e-14
30	7977987	7911413	NM_003327	TNFRSF4	0.709727	2.342405e-17	4.058684e-13	1.352895e-14
31	7977987	8054804	NM_019044	CCDC93	-0.709628	2.377278e-17	4.119110e-13	1.328745e-14
32	7977987	7952011	NM_004588	SCN2B	0.709469	2.433978e-17	4.217354e-13	1.317923e-14
33	7977987	8035201	NM_015692	CPAMD8	0.707688	3.167448e-17	5.488237e-13	1.663102e-14
34	7977987	8069910	NM_020706	SFRS15	-0.707449	3.281341e-17	5.685580e-13	1.672229e-14
35	7977987	7905817	NM_000748	CHRNB2	0.707319	3.344703e-17	5.795368e-13	1.655819e-14
36	7977987	8137596	NM_014671	UBE3C	-0.707074	3.467360e-17	6.007894e-13	1.668860e-14
37	7977987	8147483	NM_178812	MTDH	-0.706931	3.540705e-17	6.134980e-13	1.658103e-14
38	7977987	7897132	NM_022114	PRDM16	0.706408	3.823132e-17	6.624341e-13	1.743248e-14
39	7977987	8050176	NM_004763	ITGB1BP1	-0.706357	3.851817e-17	6.674043e-13	1.711293e-14
40	7977987	8026900	NM_002248	KCNN1	0.705170	4.582129e-17	7.939455e-13	1.984864e-14
41	7977987	8105778	NM_181523	PIK3R1	-0.704311	5.192191e-17	8.996508e-13	2.194270e-14
42	7977987	7915882	NM_014774	KIAA0494	-0.703809	5.585158e-17	9.677403e-13	2.304144e-14
43	7977987	8116033	NM_000505	F12	0.703797	5.594402e-17	9.693421e-13	2.254284e-14
44	7977987	8136401	NM_015135	NUP205	-0.703214	6.087617e-17	1.054801e-12	2.397276e-14
45	7977987	7970241	NM_000504	F10	0.702925	6.347604e-17	1.099849e-12	2.444110e-14
46	7977987	8036072	NM_207392	KRTDAP	0.702213	7.034331e-17	1.218838e-12	2.649649e-14
47	7977987	8023228	NM_017653	DYM	-0.702089	7.160732e-17	1.240740e-12	2.639872e-14
48	7977987	7937560	NM_002457	MUC2	0.701916	7.341030e-17	1.271980e-12	2.649959e-14
49	7977987	7909529	NM_001136223	RCOR3	-0.701868	7.392599e-17	1.280916e-12	2.614113e-14
50	7977987	7914667	NM_052896	CSMD2	0.701554	7.733229e-17	1.339937e-12	2.679873e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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