[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4974	7980352	NM_021257	NGB		neuroglobin

Fetching correlation data, please wait...
Getting list of correlations for id 4974.
Getting list of p-values for id 4974.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7980352	7977216	NM_015656	KIF26A	0.833865	2.447779e-28	4.241267e-24	4.241267e-24
2	7980352	8153101	NM_152888	COL22A1	0.801034	1.083946e-24	1.878152e-20	9.390762e-21
3	7980352	7921936	NM_177398	LMX1A	0.783619	5.053618e-23	8.756404e-19	2.918801e-19
4	7980352	8137151	NM_198455	SSPO	0.779863	1.105185e-22	1.914953e-18	4.787384e-19
5	7980352	7912031	NM_019089	HES2	0.779622	1.161406e-22	2.012369e-18	4.024737e-19
6	7980352	7913226	NM_012400	PLA2G2D	0.778040	1.606761e-22	2.784034e-18	4.640057e-19
7	7980352	7937560	NM_002457	MUC2	0.777590	1.761397e-22	3.051972e-18	4.359961e-19
8	7980352	8116195	NM_173465	COL23A1	0.775030	2.957600e-22	5.124634e-18	6.405793e-19
9	7980352	7992302	NM_020825	CRAMP1L	0.774675	3.176711e-22	5.504287e-18	6.115875e-19
10	7980352	8075934	NM_014550	CARD10	0.774223	3.477535e-22	6.025525e-18	6.025525e-19
11	7980352	8153322	NM_015193	ARC	0.770277	7.606383e-22	1.317958e-17	1.198144e-18
12	7980352	8159670	NM_006647	NOXA1	0.768946	9.870444e-22	1.710252e-17	1.425210e-18
13	7980352	8040045	NM_199235	COLEC11	0.766949	1.454147e-21	2.519601e-17	1.938154e-18
14	7980352	8153838	NM_004260	RECQL4	0.764537	2.310429e-21	4.003281e-17	2.859486e-18
15	7980352	8048460	NM_003936	CDK5R2	0.763625	2.748562e-21	4.762433e-17	3.174955e-18
16	7980352	8155942	NM_001013735	FOXB2	0.763190	2.984636e-21	5.171479e-17	3.232174e-18
17	7980352	7950195	hsa-mir-139		0.762467	3.422678e-21	5.930474e-17	3.488514e-18
18	7980352	8067409	NM_005560	LAMA5	0.762248	3.567117e-21	6.180743e-17	3.433746e-18
19	7980352	8027665	NM_001080436	WTIP	0.760942	4.559868e-21	7.900883e-17	4.158359e-18
20	7980352	8005328	NM_016239	MYO15A	0.760443	5.006090e-21	8.674052e-17	4.337026e-18
21	7980352	7995776	NM_005954	MT3	0.760442	5.007333e-21	8.676206e-17	4.131526e-18
22	7980352	8032465	NM_144616	JSRP1	0.760163	5.275582e-21	9.141000e-17	4.155000e-18
23	7980352	7995340			0.759442	6.033874e-21	1.045489e-16	4.545606e-18
24	7980352	8032197	NM_152769	C19orf26	0.758694	6.934168e-21	1.201483e-16	5.006181e-18
25	7980352	7962703	NM_001844	COL2A1	0.758353	7.385590e-21	1.279701e-16	5.118805e-18
26	7980352	8032699	NM_015174	ZFR2	0.755421	1.266073e-20	2.193725e-16	8.437404e-18
27	7980352	8062823	NM_000457	HNF4A	0.754842	1.406967e-20	2.437851e-16	9.029080e-18
28	7980352	8069037	NM_000383	AIRE	0.753990	1.642506e-20	2.845969e-16	1.016418e-17
29	7980352	8170786	AF514420	LCA10	0.753424	1.819468e-20	3.152592e-16	1.087101e-17
30	7980352	8024808	NM_020209	SHD	0.752666	2.086410e-20	3.615122e-16	1.205041e-17
31	7980352	8049942	NM_080741	NEU4	0.752491	2.153112e-20	3.730696e-16	1.203450e-17
32	7980352	8125383	NM_004557	NOTCH4	0.752234	2.255134e-20	3.907471e-16	1.221085e-17
33	7980352	7897132	NM_022114	PRDM16	0.751925	2.383570e-20	4.130013e-16	1.251519e-17
34	7980352	8051622	NM_001031684	SRSF7	-0.751734	2.466884e-20	4.274369e-16	1.257167e-17
35	7980352	7978093	NM_032452	JPH4	0.749206	3.871313e-20	6.707825e-16	1.916521e-17
36	7980352	8175732	NM_175742	MAGEA2	0.748896	4.089325e-20	7.085573e-16	1.968215e-17
37	7980352	8075126	NM_002430	MN1	0.748866	4.110999e-20	7.123128e-16	1.925170e-17
38	7980352	8031847	NM_182572	ZSCAN1	0.748542	4.353411e-20	7.543155e-16	1.985041e-17
39	7980352	7977203	NM_001080464	ASPG	0.748359	4.496993e-20	7.791939e-16	1.997933e-17
40	7980352	7899528	NM_000911	OPRD1	0.746388	6.357617e-20	1.101584e-15	2.753961e-17
41	7980352	8062864	NM_003881	WISP2	0.746107	6.676886e-20	1.156904e-15	2.821717e-17
42	7980352	8134827	NM_173564	C7orf51	0.745729	7.132006e-20	1.235763e-15	2.942292e-17
43	7980352	7952893	BC024764	IQSEC3	0.745568	7.335617e-20	1.271042e-15	2.955913e-17
44	7980352	7987701	NM_016642	SPTBN5	0.745092	7.968599e-20	1.380719e-15	3.137998e-17
45	7980352	8075118	NM_001887	CRYBB1	0.744546	8.760481e-20	1.517928e-15	3.373174e-17
46	7980352	7953450	NM_014262	LEPREL2	0.743904	9.791386e-20	1.696553e-15	3.688160e-17
47	7980352	8027556	NM_002333	LRP3	0.743838	9.903071e-20	1.715905e-15	3.650862e-17
48	7980352	8077185	NM_000039	APOA1	0.743814	9.944925e-20	1.723157e-15	3.589911e-17
49	7980352	8170562	NM_175742	MAGEA2	0.743139	1.117223e-19	1.935812e-15	3.950636e-17
50	7980352	7945536	NM_016564	CEND1	0.742366	1.276112e-19	2.211120e-15	4.422240e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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