[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1309	8010967	NM_022463	NXN		nucleoredoxin

Fetching correlation data, please wait...
Getting list of correlations for id 1309.
Getting list of p-values for id 1309.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8010967	7971850	NM_002590	PCDH8	0.734882	4.511239e-19	7.816625e-15	7.816625e-15
2	8010967	8112740	NM_032367	ZBED3	0.728701	1.240201e-18	2.148897e-14	1.074449e-14
3	8010967	8029489	NM_005581	BCAM	0.718460	6.240702e-18	1.081326e-13	3.604422e-14
4	8010967	8155661	NM_199135	FOXD4L3	0.710571	2.065654e-17	3.579159e-13	8.947898e-14
5	8010967	8162472	NM_021570	BARX1	0.704496	5.054560e-17	8.758035e-13	1.751607e-13
6	8010967	8161571	NM_001099279	FOXD4L2	0.700575	8.899127e-17	1.541952e-12	2.569920e-13
7	8010967	7897280	NM_001024598	HES3	0.699977	9.693115e-17	1.679526e-12	2.399323e-13
8	8010967	8149612	NM_021020	LZTS1	0.697807	1.319350e-16	2.286038e-12	2.857547e-13
9	8010967	8174642	ENST00000436902		0.695620	1.795194e-16	3.110533e-12	3.456148e-13
10	8010967	8153409	NM_201589	MAFA	0.693455	2.428815e-16	4.208407e-12	4.208407e-13
11	8010967	8073449	NM_014460	CSDC2	0.693010	2.583729e-16	4.476827e-12	4.069843e-13
12	8010967	8033455	ENST00000327607		0.690805	3.503225e-16	6.070037e-12	5.058364e-13
13	8010967	8098512	NM_021942	C4orf41	-0.688261	4.961701e-16	8.597139e-12	6.613184e-13
14	8010967	8156167	NM_024635	NAA35	-0.687470	5.524132e-16	9.571664e-12	6.836903e-13
15	8010967	7974771	NM_022495	C14orf135	-0.686989	5.896986e-16	1.021771e-11	6.811805e-13
16	8010967	8008493	NM_016424	LUC7L3	-0.683399	9.554711e-16	1.655545e-11	1.034715e-12
17	8010967	7929201	NM_003972	BTAF1	-0.682774	1.038447e-15	1.799318e-11	1.058422e-12
18	8010967	8164328	NM_173492	PIP5KL1	0.682774	1.038520e-15	1.799444e-11	9.996909e-13
19	8010967	8053022	NM_001965	EGR4	0.681677	1.201377e-15	2.081626e-11	1.095592e-12
20	8010967	7985310	NM_021214	FAM108C1	0.680338	1.434137e-15	2.484929e-11	1.242464e-12
21	8010967	8175528	NM_005634	SOX3	0.680274	1.446338e-15	2.506070e-11	1.193367e-12
22	8010967	7968333	NM_005800	USPL1	-0.679852	1.529013e-15	2.649320e-11	1.204236e-12
23	8010967	8044236	NM_181453	GCC2	-0.679763	1.547003e-15	2.680492e-11	1.165431e-12
24	8010967	8153486	NM_001162914	LOC100130274	0.679118	1.683682e-15	2.917316e-11	1.215548e-12
25	8010967	8161533	NM_001085476	FOXD4L6	0.679084	1.691338e-15	2.930582e-11	1.172233e-12
26	8010967	7949015	NM_001144936	C11orf95	0.679078	1.692565e-15	2.932707e-11	1.127964e-12
27	8010967	8159808	NM_207305	FOXD4	0.678810	1.753267e-15	3.037886e-11	1.125143e-12
28	8010967	8172447	NM_013271	PCSK1N	0.678608	1.800224e-15	3.119248e-11	1.114017e-12
29	8010967	8024995	NM_004558	NRTN	0.677919	1.969977e-15	3.413380e-11	1.177027e-12
30	8010967	7914084	NM_207397	CD164L2	0.677793	2.002705e-15	3.470087e-11	1.156696e-12
31	8010967	7962703	NM_001844	COL2A1	0.677714	2.023413e-15	3.505968e-11	1.130957e-12
32	8010967	7976783	NM_003836	DLK1	0.677504	2.079609e-15	3.603338e-11	1.126043e-12
33	8010967	8044634	NM_012184	FOXD4L1	0.677269	2.144333e-15	3.715486e-11	1.125905e-12
34	8010967	8170786	AF514420	LCA10	0.676307	2.430057e-15	4.210559e-11	1.238400e-12
35	8010967	8133704	NM_001110199	SRRM3	0.676304	2.430866e-15	4.211962e-11	1.203418e-12
36	8010967	8049919	NM_152783	D2HGDH	0.675977	2.536491e-15	4.394979e-11	1.220827e-12
37	8010967	7911750	NM_001010926	HES5	0.675717	2.623273e-15	4.545345e-11	1.228472e-12
38	8010967	8115606	NM_006425	SLU7	-0.675415	2.727769e-15	4.726406e-11	1.243791e-12
39	8010967	8170753	NM_014370	SRPK3	0.675038	2.864151e-15	4.962714e-11	1.272491e-12
40	8010967	7959946	NM_016155	MMP17	0.674515	3.064013e-15	5.309016e-11	1.327254e-12
41	8010967	8029671	NM_177417	KLC3	0.673660	3.420345e-15	5.926432e-11	1.445471e-12
42	8010967	7947928	NM_031909	C1QTNF4	0.673589	3.451472e-15	5.980366e-11	1.423897e-12
43	8010967	8010719	NM_144999	LRRC45	0.673076	3.686416e-15	6.387454e-11	1.485454e-12
44	8010967	8159670	NM_006647	NOXA1	0.671979	4.241655e-15	7.349515e-11	1.670344e-12
45	8010967	8076007	NM_025045	BAIAP2L2	0.671615	4.443117e-15	7.698588e-11	1.710797e-12
46	8010967	8113157	NM_014639	TTC37	-0.671125	4.729282e-15	8.194426e-11	1.781397e-12
47	8010967	8094968	NM_175619	ZAR1	0.671106	4.740631e-15	8.214091e-11	1.747679e-12
48	8010967	8006562	NM_033315	RASL10B	0.671062	4.767159e-15	8.260056e-11	1.720845e-12
49	8010967	8025237	NM_001080429	KIAA1543	0.670641	5.029530e-15	8.714667e-11	1.778503e-12
50	8010967	7967969	NM_138284	IL17D	0.670623	5.041186e-15	8.734863e-11	1.746973e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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