[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6140	7921571	NM_002857	PEX19		peroxisomal biogenesis factor 19

Fetching correlation data, please wait...
Getting list of correlations for id 6140.
Getting list of p-values for id 6140.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.187 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7921571	8152782	NM_014846	KIAA0196	0.756401	1.058287e-20	1.833694e-16	1.833694e-16
2	7921571	7942626	NM_003369	UVRAG	0.751889	2.399144e-20	4.156997e-16	2.078499e-16
3	7921571	7972190	NM_022118	RBM26	0.751533	2.557058e-20	4.430615e-16	1.476872e-16
4	7921571	8116760	NM_031480	RIOK1	0.748158	4.658935e-20	8.072537e-16	2.018134e-16
5	7921571	7995421	NM_031490	LONP2	0.745715	7.149543e-20	1.238801e-15	2.477603e-16
6	7921571	8133504	NM_032999	GTF2I	0.744152	9.379469e-20	1.625181e-15	2.708634e-16
7	7921571	7922250	NM_181093	SCYL3	0.741688	1.433382e-19	2.483621e-15	3.548031e-16
8	7921571	7962831	NM_001240	CCNT1	0.741165	1.567457e-19	2.715932e-15	3.394915e-16
9	7921571	7913300	NM_016287	HP1BP3	0.740872	1.647722e-19	2.855008e-15	3.172231e-16
10	7921571	8107474	NM_005509	DMXL1	0.740070	1.888592e-19	3.272364e-15	3.272364e-16
11	7921571	7970413	NR_003272	PSPC1	0.738744	2.363844e-19	4.095833e-15	3.723484e-16
12	7921571	8154793	NM_002504	NFX1	0.738730	2.369683e-19	4.105950e-15	3.421625e-16
13	7921571	8081465	NM_001142568	BBX	0.738148	2.613799e-19	4.528929e-15	3.483791e-16
14	7921571	8000687	NM_015092	SMG1	0.736631	3.371167e-19	5.841221e-15	4.172301e-16
15	7921571	7980463	NM_012245	SNW1	0.734206	5.046001e-19	8.743205e-15	5.828803e-16
16	7921571	8021228	NM_005359	SMAD4	0.734034	5.191476e-19	8.995271e-15	5.622044e-16
17	7921571	8039010	NM_018260	ZNF701	0.733927	5.283787e-19	9.155217e-15	5.385422e-16
18	7921571	8092035	NM_024947	PHC3	0.733542	5.630745e-19	9.756392e-15	5.420218e-16
19	7921571	8047641	NM_177538	CYP20A1	0.732267	6.943675e-19	1.203131e-14	6.332266e-16
20	7921571	8152553	NM_003184	TAF2	0.732066	7.176489e-19	1.243470e-14	6.217351e-16
21	7921571	8017634	NM_004396	DDX5	0.731617	7.723715e-19	1.338288e-14	6.372801e-16
22	7921571	8138030	NR_003085	PMS2	0.731000	8.541556e-19	1.479995e-14	6.727252e-16
23	7921571	8131286	NR_023384	RNF216L	0.730672	9.011463e-19	1.561416e-14	6.788766e-16
24	7921571	8023195	NM_005901	SMAD2	0.729339	1.118726e-18	1.938417e-14	8.076736e-16
25	7921571	8139896	NR_022007	PMS2L4	0.728504	1.280154e-18	2.218123e-14	8.872494e-16
26	7921571	8100251	NM_015030	FRYL	0.728195	1.345664e-18	2.331631e-14	8.967812e-16
27	7921571	8042335	NM_003375	VDAC2	0.725635	2.027305e-18	3.512712e-14	1.301005e-15
28	7921571	8050367	NM_015909	NBAS	0.725573	2.047281e-18	3.547324e-14	1.266902e-15
29	7921571	7925978	NM_017782	C10orf18	0.725296	2.139542e-18	3.707184e-14	1.278339e-15
30	7921571	8157700	NM_012197	RABGAP1	0.725289	2.141853e-18	3.711189e-14	1.237063e-15
31	7921571	7903294	NM_033055	HIAT1	0.725084	2.212724e-18	3.833988e-14	1.236770e-15
32	7921571	8001211	NM_030790	ITFG1	0.724964	2.255556e-18	3.908202e-14	1.221313e-15
33	7921571	8082940	NM_015396	ARMC8	0.724392	2.469294e-18	4.278546e-14	1.296529e-15
34	7921571	8147228	NM_001359	DECR1	0.724000	2.627344e-18	4.552399e-14	1.338941e-15
35	7921571	8156718	NM_002486	NCBP1	0.723748	2.733977e-18	4.737162e-14	1.353475e-15
36	7921571	7915882	NM_014774	KIAA0494	0.723655	2.774741e-18	4.807794e-14	1.335498e-15
37	7921571	7901447	NM_032864	PRPF38A	0.722863	3.143172e-18	5.446173e-14	1.471939e-15
38	7921571	8092564	NM_004593	TRA2B	0.722657	3.246645e-18	5.625462e-14	1.480385e-15
39	7921571	8101376	NM_014933	SEC31A	0.722495	3.330227e-18	5.770285e-14	1.479560e-15
40	7921571	8150928	NM_003580	NSMAF	0.721479	3.905195e-18	6.766531e-14	1.691633e-15
41	7921571	8088151	NM_022899	ACTR8	0.721313	4.008029e-18	6.944712e-14	1.693832e-15
42	7921571	7942032	NM_018312	PPP6R3	0.720532	4.527091e-18	7.844090e-14	1.867641e-15
43	7921571	8085852	NM_018297	NGLY1	0.720409	4.614050e-18	7.994764e-14	1.859247e-15
44	7921571	8083282	NM_032383	HPS3	0.720158	4.798210e-18	8.313859e-14	1.889513e-15
45	7921571	8051928	NM_006036	PREPL	0.719951	4.955169e-18	8.585821e-14	1.907960e-15
46	7921571	7973770	NM_016106	SCFD1	0.719900	4.994477e-18	8.653931e-14	1.881289e-15
47	7921571	8163882	NM_016322	RAB14	0.719795	5.076691e-18	8.796383e-14	1.871571e-15
48	7921571	8154316	NM_152896	UHRF2	0.719609	5.225303e-18	9.053883e-14	1.886226e-15
49	7921571	8130116	NM_004690	LATS1	0.719592	5.238621e-18	9.076958e-14	1.852440e-15
50	7921571	7909011	NM_002393	MDM4	0.718964	5.774158e-18	1.000488e-13	2.000977e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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