[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1636	8079433	NM_000316	PTH1R		parathyroid hormone 1 receptor

Fetching correlation data, please wait...
Getting list of correlations for id 1636.
Getting list of p-values for id 1636.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8079433	8153101	NM_152888	COL22A1	0.786658	2.652857e-23	4.596606e-19	4.596606e-19
2	8079433	8125072	NM_025258	C6orf27	0.786143	2.961554e-23	5.131484e-19	2.565742e-19
3	8079433	7936144	NM_000494	COL17A1	0.784909	3.849296e-23	6.669675e-19	2.223225e-19
4	8079433	8135099	NM_133457	EMID2	0.781478	7.909491e-23	1.370477e-18	3.426194e-19
5	8079433	7983663	NM_005154	USP8	-0.774427	3.338752e-22	5.785056e-18	1.157011e-18
6	8079433	7952227	NM_015645	C1QTNF5	0.772977	4.460539e-22	7.728776e-18	1.288129e-18
7	8079433	8104253	NM_033120	NKD2	0.769983	8.057799e-22	1.396175e-17	1.994535e-18
8	8079433	7987701	NM_016642	SPTBN5	0.768784	1.018567e-21	1.764871e-17	2.206088e-18
9	8079433	8024605	NM_021938	CELF5	0.768209	1.139338e-21	1.974131e-17	2.193479e-18
10	8079433	8060134	NM_004321	KIF1A	0.768084	1.167307e-21	2.022593e-17	2.022593e-18
11	8079433	7937560	NM_002457	MUC2	0.767897	1.210318e-21	2.097118e-17	1.906471e-18
12	8079433	7992049	NM_207112	HAGHL	0.767601	1.281755e-21	2.220897e-17	1.850747e-18
13	8079433	8028407	NM_000540	RYR1	0.765396	1.960476e-21	3.396916e-17	2.613013e-18
14	8079433	8174642	ENST00000436902		0.765086	2.080477e-21	3.604843e-17	2.574888e-18
15	8079433	8027556	NM_002333	LRP3	0.764335	2.401281e-21	4.160699e-17	2.773799e-18
16	8079433	7923360	NM_003281	TNNI1	0.763827	2.644844e-21	4.582721e-17	2.864201e-18
17	8079433	8110382	NM_030567	PRR7	0.763316	2.914325e-21	5.049651e-17	2.970383e-18
18	8079433	8008228	NM_138281	DLX4	0.761919	3.794879e-21	6.575387e-17	3.652993e-18
19	8079433	8133704	NM_001110199	SRRM3	0.761303	4.261447e-21	7.383809e-17	3.886215e-18
20	8079433	7896985	NM_080875	MIB2	0.761247	4.306305e-21	7.461535e-17	3.730767e-18
21	8079433	8032699	NM_015174	ZFR2	0.760107	5.330963e-21	9.236959e-17	4.398552e-18
22	8079433	8159670	NM_006647	NOXA1	0.760104	5.333734e-21	9.241761e-17	4.200800e-18
23	8079433	8076962	NM_002969	MAPK12	0.760039	5.399023e-21	9.354887e-17	4.067342e-18
24	8079433	8098895	NM_001013622	FAM53A	0.759300	6.195278e-21	1.073456e-16	4.472732e-18
25	8079433	7941457	NM_006848	CCDC85B	0.758970	6.587847e-21	1.141476e-16	4.565905e-18
26	8079433	8107897	NM_003687	PDLIM4	0.758904	6.668325e-21	1.155421e-16	4.443925e-18
27	8079433	7898556	NM_001040125	PQLC2	0.758880	6.698863e-21	1.160712e-16	4.298933e-18
28	8079433	8153876	NM_025251	ARHGAP39	0.758343	7.399866e-21	1.282175e-16	4.579196e-18
29	8079433	8064059	NM_020882	COL20A1	0.757907	8.021093e-21	1.389815e-16	4.792465e-18
30	8079433	7955305	NM_001652	AQP6	0.757609	8.474965e-21	1.468457e-16	4.894857e-18
31	8079433	7942123	NM_053056	CCND1	0.757347	8.893483e-21	1.540974e-16	4.970883e-18
32	8079433	7989887	NM_032445	MEGF11	0.757023	9.440836e-21	1.635814e-16	5.111917e-18
33	8079433	8073941	ENST00000411210		0.756915	9.630217e-21	1.668628e-16	5.056447e-18
34	8079433	8064242	NR_027686	NCRNA00176	0.756241	1.089800e-20	1.888297e-16	5.553815e-18
35	8079433	8155083	NM_001216	CA9	0.755060	1.352220e-20	2.342991e-16	6.694260e-18
36	8079433	7906307	NM_018240	KIRREL	0.754045	1.626145e-20	2.817622e-16	7.826728e-18
37	8079433	8114550	NM_004883	NRG2	0.753497	1.795900e-20	3.111755e-16	8.410150e-18
38	8079433	8131056	NM_017781	CYP2W1	0.752990	1.967922e-20	3.409818e-16	8.973206e-18
39	8079433	8075934	NM_014550	CARD10	0.752945	1.984081e-20	3.437817e-16	8.814915e-18
40	8079433	8013384	NM_000691	ALDH3A1	0.752928	1.990093e-20	3.448234e-16	8.620585e-18
41	8079433	8112121	NM_173514	SLC38A9	-0.752849	2.018676e-20	3.497760e-16	8.531123e-18
42	8079433	7906284	NM_144702	C1orf92	0.752063	2.325475e-20	4.029351e-16	9.593693e-18
43	8079433	7991939	NM_145294	WDR90	0.750966	2.830517e-20	4.904436e-16	1.140567e-17
44	8079433	8049942	NM_080741	NEU4	0.750298	3.188382e-20	5.524509e-16	1.255570e-17
45	8079433	8125234	NM_019105	TNXB	0.750274	3.202218e-20	5.548483e-16	1.232996e-17
46	8079433	8036072	NM_207392	KRTDAP	0.749876	3.437105e-20	5.955471e-16	1.294668e-17
47	8079433	8029950	NM_014601	EHD2	0.749129	3.924142e-20	6.799360e-16	1.446672e-17
48	8079433	8151609	NM_172239	REXO1L1	0.749109	3.938439e-20	6.824134e-16	1.421695e-17
49	8079433	8137931	NM_001100600	MMD2	0.748760	4.189257e-20	7.258725e-16	1.481372e-17
50	8079433	7959234	NM_000545	HNF1A	0.748684	4.245660e-20	7.356455e-16	1.471291e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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