[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4928	8067662	NM_005975	PTK6		PTK6 protein tyrosine kinase 6

Fetching correlation data, please wait...
Getting list of correlations for id 4928.
Getting list of p-values for id 4928.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8067662	7897006	NM_006983	MMP23B	0.806494	3.002989e-25	5.203279e-21	5.203279e-21
2	8067662	8133704	NM_001110199	SRRM3	0.771046	6.538715e-22	1.132963e-17	5.664816e-18
3	8067662	8077036	BC031069	FAM116B	0.768198	1.141564e-21	1.977988e-17	6.593294e-18
4	8067662	8045198	NM_001079530	CFC1B	0.765718	1.843039e-21	3.193433e-17	7.983582e-18
5	8067662	8055239	NM_032545	CFC1	0.764283	2.424841e-21	4.201522e-17	8.403044e-18
6	8067662	8033462	NM_206833	CTXN1	0.759749	5.698783e-21	9.874282e-17	1.645714e-17
7	8067662	8023990	NM_020637	FGF22	0.755616	1.221693e-20	2.116828e-16	3.024040e-17
8	8067662	8153704	NM_031309	SCRT1	0.754041	1.627334e-20	2.819681e-16	3.524602e-17
9	8067662	8086985	NM_000094	COL7A1	0.753535	1.783511e-20	3.090289e-16	3.433654e-17
10	8067662	7912004	NM_207370	GPR153	0.752919	1.993440e-20	3.454033e-16	3.454033e-17
11	8067662	8148867	NM_145754	KIFC2	0.749828	3.466487e-20	6.006383e-16	5.460348e-17
12	8067662	8162472	NM_021570	BARX1	0.749326	3.789792e-20	6.566573e-16	5.472144e-17
13	8067662	8159808	NM_207305	FOXD4	0.749054	3.976471e-20	6.890032e-16	5.300024e-17
14	8067662	7996468	NM_024712	ELMO3	0.748614	4.298653e-20	7.448275e-16	5.320197e-17
15	8067662	8024995	NM_004558	NRTN	0.746570	6.157795e-20	1.066961e-15	7.113074e-17
16	8067662	8032088	NM_214710	PRSSL1	0.746259	6.502010e-20	1.126603e-15	7.041271e-17
17	8067662	8110382	NM_030567	PRR7	0.745828	7.010239e-20	1.214664e-15	7.145083e-17
18	8067662	7941890	NM_020811	CARNS1	0.744939	8.183610e-20	1.417974e-15	7.877634e-17
19	8067662	8087116	NM_001008269	TMEM89	0.744838	8.327656e-20	1.442933e-15	7.594384e-17
20	8067662	8159670	NM_006647	NOXA1	0.743673	1.018930e-19	1.765500e-15	8.827499e-17
21	8067662	8000467	NM_001109763	GSG1L	0.742801	1.184099e-19	2.051689e-15	9.769948e-17
22	8067662	8074558	NM_023004	RTN4R	0.742226	1.307181e-19	2.264953e-15	1.029524e-16
23	8067662	8038362	NM_178449	PTH2	0.740787	1.671585e-19	2.896355e-15	1.259285e-16
24	8067662	7952893	BC024764	IQSEC3	0.739878	1.950992e-19	3.380484e-15	1.408535e-16
25	8067662	8025041	NM_139161	CRB3	0.739771	1.986980e-19	3.442840e-15	1.377136e-16
26	8067662	8027556	NM_002333	LRP3	0.738971	2.274912e-19	3.941740e-15	1.516054e-16
27	8067662	8093826	NM_000683	ADRA2C	0.738454	2.482383e-19	4.301225e-15	1.593046e-16
28	8067662	8032094	NM_024888	LPPR3	0.737826	2.759505e-19	4.781395e-15	1.707641e-16
29	8067662	8010017	NM_001258	CDK3	0.736297	3.565198e-19	6.177418e-15	2.130144e-16
30	8067662	7896985	NM_080875	MIB2	0.736266	3.583558e-19	6.209231e-15	2.069744e-16
31	8067662	8048541	NM_001927	DES	0.735685	3.948145e-19	6.840951e-15	2.206758e-16
32	8067662	8093440	NM_001004356	FGFRL1	0.735225	4.261530e-19	7.383952e-15	2.307485e-16
33	8067662	7912031	NM_019089	HES2	0.735060	4.380088e-19	7.589379e-15	2.299812e-16
34	8067662	7899957	NM_005095	ZMYM4	-0.734007	5.214503e-19	9.035169e-15	2.657403e-16
35	8067662	8052932			0.733148	6.007898e-19	1.040989e-14	2.974253e-16
36	8067662	8027760	NM_005031	FXYD1	0.732724	6.441906e-19	1.116189e-14	3.100525e-16
37	8067662	8162283	NM_004560	ROR2	0.732544	6.635031e-19	1.149652e-14	3.107167e-16
38	8067662	7980425	NM_199296	ISM2	0.731147	8.340144e-19	1.445097e-14	3.802886e-16
39	8067662	8120022	NM_001253	CDC5L	-0.730844	8.762213e-19	1.518229e-14	3.892894e-16
40	8067662	7979876	ENST00000413777		0.730727	8.931056e-19	1.547484e-14	3.868710e-16
41	8067662	8137959	NM_001080495	TNRC18	0.730644	9.051296e-19	1.568318e-14	3.825166e-16
42	8067662	8037563	NM_006663	PPP1R13L	0.730593	9.127971e-19	1.581604e-14	3.765723e-16
43	8067662	7994260	NM_006040	HS3ST4	0.730333	9.521747e-19	1.649833e-14	3.836821e-16
44	8067662	7912706	NM_004431	EPHA2	0.730022	1.001555e-18	1.735395e-14	3.944079e-16
45	8067662	8075934	NM_014550	CARD10	0.729518	1.086806e-18	1.883109e-14	4.184686e-16
46	8067662	8024605	NM_021938	CELF5	0.729475	1.094288e-18	1.896073e-14	4.121898e-16
47	8067662	8050557	NM_001006946	SDC1	0.729430	1.102448e-18	1.910211e-14	4.064280e-16
48	8067662	7967039	NM_002442	MSI1	0.728541	1.272688e-18	2.205187e-14	4.594139e-16
49	8067662	8009951	NM_000213	ITGB4	0.728105	1.365262e-18	2.365589e-14	4.827733e-16
50	8067662	7898431	NM_016233	PADI3	0.727765	1.441908e-18	2.498394e-14	4.996788e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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