[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7298	8034722	NM_002918	RFX1		regulatory factor X, 1 (influences HLA class II expression)

Fetching correlation data, please wait...
Getting list of correlations for id 7298.
Getting list of p-values for id 7298.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8034722	8053046	NM_003584	DUSP11	-0.769226	9.345679e-22	1.619326e-17	1.619326e-17
2	8034722	7901299	NM_016308	CMPK1	-0.759156	6.364056e-21	1.102700e-16	5.513500e-17
3	8034722	8039947	NM_006625	SRSF10	-0.750779	2.926423e-20	5.070613e-16	1.690204e-16
4	8034722	8155946	NM_033305	VPS13A	-0.745392	7.563068e-20	1.310453e-15	3.276132e-16
5	8034722	7913712	NM_006625	SRSF10	-0.742924	1.159367e-19	2.008835e-15	4.017669e-16
6	8034722	8101340	NR_003249	HNRPDL	-0.740433	1.775665e-19	3.076695e-15	5.127825e-16
7	8034722	8082911	NM_006153	NCK1	-0.739486	2.085159e-19	3.612956e-15	5.161365e-16
8	8034722	8027439	NM_001136156	ZNF507	-0.738798	2.342592e-19	4.059009e-15	5.073762e-16
9	8034722	7976243	NM_017437	CPSF2	-0.735583	4.015670e-19	6.957951e-15	7.731056e-16
10	8034722	8070341	NM_033656	BRWD1	-0.735127	4.332015e-19	7.506083e-15	7.506083e-16
11	8034722	7974566	NM_018229	MUDENG	-0.734441	4.853149e-19	8.409052e-15	7.644593e-16
12	8034722	7953878	NM_001004419	CLEC2D	-0.733897	5.310260e-19	9.201088e-15	7.667573e-16
13	8034722	7918825	NM_001007553	CSDE1	-0.733002	6.154418e-19	1.066376e-14	8.202893e-16
14	8034722	8047339	NR_026584	BZW1L1	-0.732558	6.619742e-19	1.147003e-14	8.192876e-16
15	8034722	8045697	NM_018151	RIF1	-0.731984	7.273231e-19	1.260233e-14	8.401552e-16
16	8034722	7935320	NM_020123	TM9SF3	-0.731777	7.524638e-19	1.303794e-14	8.148713e-16
17	8034722	7908421	NM_004600	TROVE2	-0.730500	9.266591e-19	1.605622e-14	9.444837e-16
18	8034722	7939137	NM_006360	EIF3M	-0.729231	1.138351e-18	1.972422e-14	1.095790e-15
19	8034722	8028186	NM_007145	ZNF146	-0.729148	1.153859e-18	1.999291e-14	1.052259e-15
20	8034722	8088219	NM_001112736	C3orf63	-0.728301	1.322833e-18	2.292072e-14	1.146036e-15
21	8034722	8109697	NM_004060	CCNG1	-0.728298	1.323432e-18	2.293110e-14	1.091957e-15
22	8034722	7947434	NM_033406	FBXO3	-0.728289	1.325420e-18	2.296555e-14	1.043889e-15
23	8034722	8105463	NM_022913	GPBP1	-0.727299	1.554064e-18	2.692727e-14	1.170751e-15
24	8034722	8084694	NM_001967	EIF4A2	-0.724159	2.562316e-18	4.439726e-14	1.849886e-15
25	8034722	8094848	NM_006345	SLC30A9	-0.723461	2.861021e-18	4.957291e-14	1.982916e-15
26	8034722	8129193	NM_001042475	C6orf204	-0.722998	3.077443e-18	5.332286e-14	2.050879e-15
27	8034722	8097480	NM_057175	NAA15	-0.722753	3.198310e-18	5.541711e-14	2.052486e-15
28	8034722	7928300	NM_173473	ANAPC16	-0.721704	3.770089e-18	6.532433e-14	2.333012e-15
29	8034722	7956937	NM_015646	RAP1B	-0.721352	3.983574e-18	6.902340e-14	2.380117e-15
30	8034722	8105353	NM_015360	SKIV2L2	-0.719573	5.253803e-18	9.103264e-14	3.034421e-15
31	8034722	8047097	NM_014905	GLS	-0.719411	5.388095e-18	9.335952e-14	3.011597e-15
32	8034722	8083183	NM_001080415	SR140	-0.718164	6.533036e-18	1.131979e-13	3.537435e-15
33	8034722	7943620	NM_000051	ATM	-0.716679	8.206298e-18	1.421905e-13	4.308804e-15
34	8034722	7903988	NM_001010935	RAP1A	-0.716145	8.904859e-18	1.542945e-13	4.538073e-15
35	8034722	8094408	NM_013367	ANAPC4	-0.715990	9.118634e-18	1.579986e-13	4.514245e-15
36	8034722	8112728	NM_001089704	RAP1BL	-0.715629	9.634781e-18	1.669418e-13	4.637274e-15
37	8034722	8132503	NM_004760	STK17A	-0.715021	1.056848e-17	1.831201e-13	4.949193e-15
38	8034722	8048014	NM_199229	RPE	-0.715021	1.056892e-17	1.831276e-13	4.819148e-15
39	8034722	8052526	NM_003400	XPO1	-0.715001	1.060089e-17	1.836816e-13	4.709785e-15
40	8034722	7995552	NM_015247	CYLD	-0.714714	1.107261e-17	1.918552e-13	4.796379e-15
41	8034722	7994565	NM_018427	RRN3	-0.714145	1.207189e-17	2.091696e-13	5.101698e-15
42	8034722	7903281	NM_012243	SLC35A3	-0.713834	1.265281e-17	2.192353e-13	5.219887e-15
43	8034722	8078834	NM_020839	WDR48	-0.713696	1.291889e-17	2.238455e-13	5.205710e-15
44	8034722	8100615	NM_018227	UBA6	-0.713527	1.325333e-17	2.296404e-13	5.219099e-15
45	8034722	8040386	NM_004939	DDX1	-0.713417	1.347541e-17	2.334885e-13	5.188633e-15
46	8034722	7973770	NM_016106	SCFD1	-0.712921	1.452342e-17	2.516473e-13	5.470594e-15
47	8034722	8009366	NM_015462	NOL11	-0.712301	1.594373e-17	2.762570e-13	5.877808e-15
48	8034722	8109597	NM_145049	UBLCP1	-0.712013	1.664904e-17	2.884779e-13	6.009957e-15
49	8034722	7957633	NM_006838	METAP2	-0.711499	1.798276e-17	3.115873e-13	6.358925e-15
50	8034722	8058161	NM_006190	ORC2L	-0.710842	1.983770e-17	3.437279e-13	6.874558e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation