[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6770	8155110	NM_001080496	RGP1		RGP1 retrograde golgi transport homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 6770.
Getting list of p-values for id 6770.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.105 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8155110	8010161	NM_006640	SEPT9	0.607409	6.421000e-12	1.112567e-7	1.112567e-7
2	8155110	8133275	NM_172020	POM121	0.589730	3.610834e-11	6.256492e-7	3.128246e-7
3	8155110	8178011	NM_080686	BAT2	0.588668	3.992290e-11	6.917441e-7	2.305814e-7
4	8155110	8118174	NM_080686	BAT2	0.584384	5.964962e-11	1.033549e-6	2.583872e-7
5	8155110	8012376	NM_014232	VAMP2	0.570133	2.176221e-10	3.770738e-6	7.541476e-7
6	8155110	7994386	NM_007245	ATXN2L	0.566543	2.986336e-10	5.174424e-6	8.624040e-7
7	8155110	8085431	NM_024923	NUP210	0.557924	6.286402e-10	1.089245e-5	1.556064e-6
8	8155110	7986049	NM_022769	CRTC3	0.557619	6.451643e-10	1.117876e-5	1.397345e-6
9	8155110	8140297	NM_001099415	POM121C	0.557260	6.651476e-10	1.152501e-5	1.280557e-6
10	8155110	7924760	NM_002221	ITPKB	0.554991	8.059245e-10	1.396425e-5	1.396425e-6
11	8155110	7935968	NM_003893	LDB1	0.554003	8.758421e-10	1.517572e-5	1.379611e-6
12	8155110	8158839	NM_013318	BAT2L1	0.552730	9.745304e-10	1.688569e-5	1.407141e-6
13	8155110	8119627	NM_006245	PPP2R5D	0.550697	1.154570e-9	2.000523e-5	1.538864e-6
14	8155110	7949104	NM_001098671	RASGRP2	0.546613	1.617640e-9	2.802885e-5	2.002061e-6
15	8155110	7984203	NM_015042	ZNF609	0.545328	1.796992e-9	3.113648e-5	2.075765e-6
16	8155110	8031913	NM_005762	TRIM28	0.538820	3.040526e-9	5.268320e-5	3.292700e-6
17	8155110	8033162	NM_003685	KHSRP	0.538118	3.215852e-9	5.572107e-5	3.277710e-6
18	8155110	7959361	NM_014938	MLXIP	0.537776	3.304709e-9	5.726070e-5	3.181150e-6
19	8155110	8076137	NM_015374	SUN2	0.537094	3.489064e-9	6.045501e-5	3.181843e-6
20	8155110	8075343	NM_005877	SF3A1	0.536360	3.698338e-9	6.408111e-5	3.204055e-6
21	8155110	7923917	NM_005449	FAIM3	0.536265	3.726344e-9	6.456636e-5	3.074589e-6
22	8155110	7999614	NM_006985	NPIP	0.534017	4.450383e-9	7.711179e-5	3.505081e-6
23	8155110	8074647	NM_058004	PI4KA	0.532706	4.933196e-9	8.547749e-5	3.716413e-6
24	8155110	8032137	NM_001033026	C19orf6	0.532542	4.996866e-9	8.658071e-5	3.607529e-6
25	8155110	8168215	NM_005120	MED12	0.528257	6.973711e-9	1.208335e-4	4.833339e-6
26	8155110	7993404	NM_006985	NPIP	0.528001	7.112610e-9	1.232402e-4	4.740007e-6
27	8155110	7994889	NM_006662	SRCAP	0.525552	8.586259e-9	1.487741e-4	5.510152e-6
28	8155110	7976726	NM_016337	EVL	0.523858	9.772563e-9	1.693292e-4	6.047471e-6
29	8155110	8029147	NM_199002	ARHGEF1	0.521577	1.161853e-8	2.013142e-4	6.941869e-6
30	8155110	8164343	NM_001035254	FAM102A	0.521198	1.195662e-8	2.071724e-4	6.905747e-6
31	8155110	8004431	NM_000937	POLR2A	0.519979	1.310643e-8	2.270951e-4	7.325650e-6
32	8155110	7912257	NM_001009566	CLSTN1	0.519934	1.315076e-8	2.278632e-4	7.120724e-6
33	8155110	8054077	NM_005735	ACTR1B	0.519385	1.370460e-8	2.374596e-4	7.195744e-6
34	8155110	7949146	NM_004630	SF1	0.517216	1.611880e-8	2.792905e-4	8.214427e-6
35	8155110	8131253	NM_001037165	FOXK1	0.516402	1.712562e-8	2.967356e-4	8.478161e-6
36	8155110	8024170	NM_012292	HMHA1	0.515020	1.897464e-8	3.287735e-4	9.132598e-6
37	8155110	7959995	NM_015409	EP400	0.513081	2.189334e-8	3.793459e-4	1.025259e-5
38	8155110	8014723	NM_003559	PIP4K2B	0.512260	2.325355e-8	4.029143e-4	1.060301e-5
39	8155110	7937900	NM_003156	STIM1	0.510836	2.580835e-8	4.471812e-4	1.146618e-5
40	8155110	8158829	NM_013318	BAT2L1	0.510474	2.649879e-8	4.591445e-4	1.147861e-5
41	8155110	8071768	NM_003073	SMARCB1	0.507735	3.233042e-8	5.601891e-4	1.366315e-5
42	8155110	8171136	NM_178129	P2RY8	0.506518	3.529791e-8	6.116068e-4	1.456207e-5
43	8155110	8177026	NM_178129	P2RY8	0.506518	3.529791e-8	6.116068e-4	1.422341e-5
44	8155110	8049317	NM_152879	DGKD	0.506413	3.556750e-8	6.162781e-4	1.400632e-5
45	8155110	7918517	NM_024102	WDR77	0.505712	3.740428e-8	6.481039e-4	1.440231e-5
46	8155110	7993546	NM_006985	NPIP	0.505595	3.772169e-8	6.536037e-4	1.420878e-5
47	8155110	7899220	NM_006015	ARID1A	0.505471	3.805768e-8	6.594254e-4	1.403033e-5
48	8155110	8024358	NM_001319	CSNK1G2	0.504382	4.114651e-8	7.129456e-4	1.485303e-5
49	8155110	8031176	NM_052925	LENG8	0.504375	4.116667e-8	7.132948e-4	1.455704e-5
50	8155110	8026315	NM_213560	PKN1	0.504269	4.148033e-8	7.187296e-4	1.437459e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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