[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15505	8043324	NM_001024457	RGPD1		RANBP2-like and GRIP domain containing 1
15506	8053622	NM_001024457	RGPD1		RANBP2-like and GRIP domain containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 15505.
Getting list of p-values for id 15505.
1 of 2 done.
Getting list of correlations for id 15506.
Getting list of p-values for id 15506.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.218 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8053622	8043324	NM_001024457	RGPD1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8043324	8053622	NM_001024457	RGPD1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8053622	8044161	NM_182588	RGPD4	0.970840	1.041934e-65	3.610718e-61	1.203573e-61
4	8043324	8044161	NM_182588	RGPD4	0.970840	1.041934e-65	3.610718e-61	9.026796e-62
5	8043324	8054414	NM_001144013	RGPD3	0.966426	1.327003e-62	4.598596e-58	9.197192e-59
6	8053622	8054414	NM_001144013	RGPD3	0.966426	1.327003e-62	4.598596e-58	7.664327e-59
7	8053622	8054532			0.927352	9.016382e-46	3.124537e-41	4.463624e-42
8	8043324	8054532			0.927352	9.016382e-46	3.124537e-41	3.905671e-42
9	8053622	8054676	NM_005054	RGPD5	0.924293	6.972250e-45	2.416164e-40	2.684626e-41
10	8043324	8054676	NM_005054	RGPD5	0.924293	6.972250e-45	2.416164e-40	2.416164e-41
11	8053622	8044304	NM_001123363	RGPD6	0.923995	8.471982e-45	2.935881e-40	2.668982e-41
12	8043324	8044304	NM_001123363	RGPD6	0.923995	8.471982e-45	2.935881e-40	2.446567e-41
13	8043324	8054557			0.921840	3.382669e-44	1.172230e-39	9.017156e-41
14	8053622	8054557			0.921840	3.382669e-44	1.172230e-39	8.373073e-41
15	8043324	7909011	NM_002393	MDM4	0.767882	1.213841e-21	4.206445e-17	2.804297e-18
16	8053622	7909011	NM_002393	MDM4	0.767882	1.213841e-21	4.206445e-17	2.629028e-18
17	8043324	7933947	NM_022079	HERC4	0.762435	3.443325e-21	1.193250e-16	7.019116e-18
18	8053622	7933947	NM_022079	HERC4	0.762435	3.443325e-21	1.193250e-16	6.629165e-18
19	8043324	7978866	NM_004713	SDCCAG1	0.759045	6.496438e-21	2.251276e-16	1.184882e-17
20	8053622	7978866	NM_004713	SDCCAG1	0.759045	6.496438e-21	2.251276e-16	1.125638e-17
21	8053622	8120992	NM_015021	ZNF292	0.754516	1.492931e-20	5.173602e-16	2.463620e-17
22	8043324	8120992	NM_015021	ZNF292	0.754516	1.492931e-20	5.173602e-16	2.351637e-17
23	8053622	8114861	NM_020117	LARS	0.754224	1.574047e-20	5.454701e-16	2.371609e-17
24	8043324	8114861	NM_020117	LARS	0.754224	1.574047e-20	5.454701e-16	2.272792e-17
25	8043324	8066009	NM_184234	RBM39	0.753042	1.949662e-20	6.756360e-16	2.702544e-17
26	8053622	8066009	NM_184234	RBM39	0.753042	1.949662e-20	6.756360e-16	2.598600e-17
27	8043324	8058127	NR_027856	CLK1	0.749422	3.725649e-20	1.291087e-15	4.781802e-17
28	8053622	8058127	NR_027856	CLK1	0.749422	3.725649e-20	1.291087e-15	4.611023e-17
29	8053622	7975521	NM_021239	RBM25	0.748171	4.648518e-20	1.610898e-15	5.554819e-17
30	8043324	7975521	NM_021239	RBM25	0.748171	4.648518e-20	1.610898e-15	5.369658e-17
31	8043324	8052526	NM_003400	XPO1	0.746429	6.312306e-20	2.187467e-15	7.056344e-17
32	8053622	8052526	NM_003400	XPO1	0.746429	6.312306e-20	2.187467e-15	6.835833e-17
33	8043324	8017634	NM_004396	DDX5	0.746330	6.422505e-20	2.225655e-15	6.744409e-17
34	8053622	8017634	NM_004396	DDX5	0.746330	6.422505e-20	2.225655e-15	6.546044e-17
35	8053622	8000687	NM_015092	SMG1	0.745479	7.450568e-20	2.581920e-15	7.376914e-17
36	8043324	8000687	NM_015092	SMG1	0.745479	7.450568e-20	2.581920e-15	7.172000e-17
37	8053622	8173673	NM_000489	ATRX	0.744085	9.489147e-20	3.288369e-15	8.887484e-17
38	8043324	8173673	NM_000489	ATRX	0.744085	9.489147e-20	3.288369e-15	8.653602e-17
39	8043324	7964937	NM_144982	ZFC3H1	0.743977	9.668270e-20	3.350442e-15	8.590878e-17
40	8053622	7964937	NM_144982	ZFC3H1	0.743977	9.668270e-20	3.350442e-15	8.376106e-17
41	8053622	7922912	NM_003292	TPR	0.743805	9.959950e-20	3.451521e-15	8.418344e-17
42	8043324	7922912	NM_003292	TPR	0.743805	9.959950e-20	3.451521e-15	8.217908e-17
43	8053622	7942839	NM_015885	PCF11	0.743118	1.121418e-19	3.886162e-15	9.037585e-17
44	8043324	7942839	NM_015885	PCF11	0.743118	1.121418e-19	3.886162e-15	8.832186e-17
45	8053622	8174893	NM_001081550	THOC2	0.743010	1.142351e-19	3.958704e-15	8.797119e-17
46	8043324	8174893	NM_001081550	THOC2	0.743010	1.142351e-19	3.958704e-15	8.605878e-17
47	8043324	8052443	NM_014709	USP34	0.742899	1.164375e-19	4.035026e-15	8.585162e-17
48	8053622	8052443	NM_014709	USP34	0.742899	1.164375e-19	4.035026e-15	8.406304e-17
49	8043324	8116664	NM_003913	PRPF4B	0.741647	1.443404e-19	5.001973e-15	1.020811e-16
50	8053622	8116664	NM_003913	PRPF4B	0.741647	1.443404e-19	5.001973e-15	1.000395e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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