[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1957	8095545	NM_001037442	RUFY3		RUN and FYVE domain containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 1957.
Getting list of p-values for id 1957.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8095545	8154656	NM_022160	DMRTA1	-0.627007	8.320642e-13	1.441718e-8	1.441718e-8
2	8095545	8149652	NM_005144	HR	-0.626025	9.249897e-13	1.602730e-8	8.013649e-9
3	8095545	8020029	NM_001025300	RAB12	0.622243	1.385454e-12	2.400576e-8	8.001918e-9
4	8095545	8014574	NM_007010	DDX52	0.621940	1.430698e-12	2.478971e-8	6.197428e-9
5	8095545	8105136	NM_003432	ZNF131	0.616333	2.577193e-12	4.465502e-8	8.931003e-9
6	8095545	8024995	NM_004558	NRTN	-0.615565	2.791017e-12	4.835995e-8	8.059991e-9
7	8095545	8010017	NM_001258	CDK3	-0.615484	2.814551e-12	4.876773e-8	6.966819e-9
8	8095545	8078569	NM_002078	GOLGA4	0.614420	3.141645e-12	5.443529e-8	6.804411e-9
9	8095545	8163948	NR_027125	RBM18	0.612800	3.711783e-12	6.431406e-8	7.146006e-9
10	8095545	8022625	NM_001007559	SS18	0.612603	3.787643e-12	6.562849e-8	6.562849e-9
11	8095545	7928679	NM_001012973	PLAC9	-0.611429	4.271355e-12	7.400976e-8	6.728160e-9
12	8095545	8093191	NM_001098424	DLG1	0.604662	8.456561e-12	1.465268e-7	1.221057e-8
13	8095545	7899957	NM_005095	ZMYM4	0.602996	9.979833e-12	1.729206e-7	1.330158e-8
14	8095545	8143941	NM_198285	WDR86	-0.602851	1.012471e-11	1.754308e-7	1.253077e-8
15	8095545	8120022	NM_001253	CDC5L	0.601142	1.198750e-11	2.077074e-7	1.384716e-8
16	8095545	8071234	NM_002688	SEPT5	-0.599017	1.476850e-11	2.558937e-7	1.599336e-8
17	8095545	8106534	NM_001114394	PAPD4	0.598641	1.532121e-11	2.654706e-7	1.561592e-8
18	8095545	7995583	NM_025134	CHD9	0.598553	1.545319e-11	2.677573e-7	1.487541e-8
19	8095545	7918474	NM_178454	DRAM2	0.595726	2.033971e-11	3.524262e-7	1.854875e-8
20	8095545	8045381	NM_058241	CCNT2	0.594214	2.353347e-11	4.077644e-7	2.038822e-8
21	8095545	8091648	NM_007107	SSR3	0.593157	2.604753e-11	4.513255e-7	2.149169e-8
22	8095545	8032034	NM_001136263	C2CD4C	-0.592369	2.808990e-11	4.867138e-7	2.212335e-8
23	8095545	8106479	NM_004866	SCAMP1	0.591891	2.940135e-11	5.094371e-7	2.214944e-8
24	8095545	8173629	NM_004299	ABCB7	0.591430	3.072268e-11	5.323318e-7	2.218049e-8
25	8095545	8058024	NM_012433	SF3B1	0.590330	3.411021e-11	5.910275e-7	2.364110e-8
26	8095545	8054092	NM_015348	TMEM131	0.589786	3.591922e-11	6.223724e-7	2.393740e-8
27	8095545	7896985	NM_080875	MIB2	-0.589052	3.850049e-11	6.670979e-7	2.470733e-8
28	8095545	8164235	NM_001002913	PTRH1	-0.587860	4.308321e-11	7.465028e-7	2.666081e-8
29	8095545	7991516	NM_139057	ADAMTS17	-0.587741	4.356728e-11	7.548903e-7	2.603070e-8
30	8095545	8074644	ENST00000411545		-0.585656	5.297545e-11	9.179056e-7	3.059685e-8
31	8095545	8112081	NM_019030	DHX29	0.585635	5.308036e-11	9.197233e-7	2.966850e-8
32	8095545	7936882	NM_001146340	NKX1-2	-0.584856	5.708018e-11	9.890282e-7	3.090713e-8
33	8095545	8046604	NM_003659	AGPS	0.584042	6.157162e-11	1.066851e-6	3.232883e-8
34	8095545	7931553	NM_003577	UTF1	-0.583711	6.349469e-11	1.100173e-6	3.235802e-8
35	8095545	8128592	NM_004849	ATG5	0.583670	6.373640e-11	1.104361e-6	3.155316e-8
36	8095545	7966746	NM_003806	HRK	-0.582351	7.202115e-11	1.247911e-6	3.466418e-8
37	8095545	7914791	NM_005066	SFPQ	0.582214	7.293253e-11	1.263702e-6	3.415411e-8
38	8095545	7967039	NM_002442	MSI1	-0.581918	7.495566e-11	1.298757e-6	3.417781e-8
39	8095545	8042144	NM_002908	REL	0.581626	7.700293e-11	1.334230e-6	3.421102e-8
40	8095545	8144982	NM_182795	NPM2	-0.580944	8.199285e-11	1.420690e-6	3.551725e-8
41	8095545	8133704	NM_001110199	SRRM3	-0.579318	9.517765e-11	1.649143e-6	4.022301e-8
42	8095545	7926158	NM_153256	C10orf47	-0.578305	1.043981e-10	1.808906e-6	4.306918e-8
43	8095545	8038782	NM_145232	CTU1	-0.578016	1.071771e-10	1.857058e-6	4.318739e-8
44	8095545	8037788	NM_145056	DACT3	-0.577648	1.108267e-10	1.920295e-6	4.364306e-8
45	8095545	7978449	NM_015382	HECTD1	0.575974	1.289947e-10	2.235090e-6	4.966868e-8
46	8095545	8132417	NM_003718	CDK13	0.575703	1.321903e-10	2.290462e-6	4.979266e-8
47	8095545	8104944	NM_015384	NIPBL	0.575671	1.325810e-10	2.297231e-6	4.887726e-8
48	8095545	7952984	ENST00000408512		0.575561	1.339080e-10	2.320225e-6	4.833802e-8
49	8095545	8113039	NM_002397	MEF2C	0.575532	1.342567e-10	2.326266e-6	4.747481e-8
50	8095545	8039524	NM_152600	ZNF579	-0.575149	1.389778e-10	2.408068e-6	4.816137e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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